About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides56556PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN
Paelopatides56557BAX INHIBITOR-RELATED
Paelopatides56558BAX INHIBITOR-RELATED
Paelopatides56559ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides56560-
Paelopatides56561ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides56562-
Paelopatides56563NETRIN RECEPTOR UNC5
Paelopatides56564CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides56565SRCR DOMAIN-CONTAINING PROTEIN
Paelopatides56566CADHERIN-23
Paelopatides56567OUTER DENSE FIBER OF SPERM TAILS 2
Paelopatides56568-
Paelopatides56569WD REPEAT-CONTAINING PROTEIN 17
Paelopatides56570SPERMATOGENESIS-ASSOCIATED 4-RELATED
Paelopatides56571NEDD4 FAMILY INTERACTING PROTEIN 1/2
Paelopatides56572GEM-ASSOCIATED PROTEIN 4
Paelopatides56573GEM-ASSOCIATED PROTEIN 4
Paelopatides56574-
Paelopatides56575MYELOID-DERIVED GROWTH FACTOR MYDGF
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