Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_3387-1.5 | |
| Bpl_scaf_3387-4.23 | B2 BRADYKININ RECEPTOR/ANGIOTENSIN II RECEPTOR |
| Bpl_scaf_3387-4.25 | CADHERIN-23 |
| Bpl_scaf_3387-4.26 | CADHERIN-87A |
| Bpl_scaf_3387-4.30 | CADHERIN-87A |
| Bpl_scaf_3387-4.32 | CADHERIN-23 |
| Bpl_scaf_3387-5.30 | DUF614 FAMILY PROTEIN-RELATED |
| Bpl_scaf_3387-5.33 | DUF614 FAMILY PROTEIN-RELATED |
| Bpl_scaf_3387-5.34 | DUF614 FAMILY PROTEIN-RELATED |
| Bpl_scaf_3387-5.47 | COLLAGEN ALPHA |
| Bpl_scaf_3387-5.48 | NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING |
| Bpl_scaf_3387-5.49 | DUF614 FAMILY PROTEIN-RELATED |
| Bpl_scaf_3387-5.50 | DUF614 FAMILY PROTEIN-RELATED |
| Bpl_scaf_3387-5.51 | DUF614 FAMILY PROTEIN-RELATED |
| Bpl_scaf_3387-5.52 | GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_33876-1.4 | 39S RIBOSOMAL PROTEIN L52, MITOCHONDRIAL |
| Bpl_scaf_33876-1.6 | UNCHARACTERIZED |
| Bpl_scaf_33876-1.9 | EXOCYST COMPLEX COMPONENT SEC5 |
| Bpl_scaf_33876-2.0 | |
| Bpl_scaf_33876-2.10 | ADENYLATE CYCLASE TYPE 1 |
| Bpl_scaf_33876-2.15 | M-PHASE PHOSPHOPROTEIN 6 |
| Bpl_scaf_33876-2.17 | TUDOR DOMAIN CONTAINING PROTEIN |
| Bpl_scaf_33876-2.18 | UNCHARACTERIZED |
| Bpl_scaf_3397-0.0 | |
| Bpl_scaf_3397-0.10 | |
| Bpl_scaf_33993-0.19 | VOLTAGE-GATED POTASSIUM CHANNEL |
| Bpl_scaf_33993-0.4 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_33994-0.20 | |
| Bpl_scaf_33994-0.8 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| Bpl_scaf_33995-0.11 | FATTY ACID AMIDE HYDROLASE |
| Bpl_scaf_33995-0.12 | METHYLTRANSFERASE-RELATED |
| Bpl_scaf_33995-0.2 | ELL-ASSOCIATED FACTOR EAF |
| Bpl_scaf_33995-1.13 | FATTY ACID AMIDE HYDROLASE |
| Bpl_scaf_33995-1.16 | |
| Bpl_scaf_33996-0.6 | |
| Bpl_scaf_33996-1.12 | HEAT SHOCK 70 KDA PROTEIN 14 |
| Bpl_scaf_33996-2.10 | AMINE OXIDASE |
| Bpl_scaf_33996-2.11 | CULLIN |
| Bpl_scaf_33996-2.23 | SEC61 GAMMA SUBUNIT |
| Bpl_scaf_33996-2.4 | MITOCHONDRIAL PEPTIDE METHIONINE SULFOXIDE REDUCTASE |
| Bpl_scaf_33997-0.6 | POLY [ADP-RIBOSE] POLYMERASE |
| Bpl_scaf_33997-1.10 | GOLGI INTEGRAL MEMBRANE PROTEIN 4 |
| Bpl_scaf_33997-1.27 | PHYTANOYL-COA DIOXYGENASE-RELATED-RELATED |
| Bpl_scaf_33997-1.28 | PHYTANOYL-COA DIOXYGENASE-RELATED-RELATED |
| Bpl_scaf_33997-1.29 | PHYTANOYL-COA DIOXYGENASE-RELATED-RELATED |
| Bpl_scaf_33997-10.9 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER |
| Bpl_scaf_33997-2.2 | PHYTANOYL-COA DIOXYGENASE-RELATED-RELATED |
| Bpl_scaf_33997-3.0 | |
| Bpl_scaf_33997-3.3 | PHYTANOYL-COA DIOXYGENASE-RELATED-RELATED |
| Bpl_scaf_33997-4.1 |
