Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_3367-1.7 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
| Bpl_scaf_3367-2.5 | N 2 ,N 2 -DIMETHYLGUANOSINE TRNA METHYLTRANSFERASE |
| Bpl_scaf_3367-2.9 | |
| Bpl_scaf_3367-3.3 | |
| Bpl_scaf_3367-4.5 | TYROSYL-DNA PHOSPHODIESTERASE 1 |
| Bpl_scaf_3367-4.7 | B9 DOMAIN-CONTAINING |
| Bpl_scaf_3367-5.26 | DDB1- AND CUL4-ASSOCIATED FACTOR 15 |
| Bpl_scaf_3367-5.27 | DNA-DIRECTED RNA POLYMERASE |
| Bpl_scaf_3367-5.36 | |
| Bpl_scaf_3367-5.37 | BETA TRANSDUCIN-RELATED PROTEIN |
| Bpl_scaf_3367-5.9 | |
| Bpl_scaf_33691-0.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_33691-0.11 | |
| Bpl_scaf_33691-0.13 | SCAVENGER RECEPTOR CLASS F |
| Bpl_scaf_33691-0.14 | |
| Bpl_scaf_33691-0.15 | |
| Bpl_scaf_33691-0.8 | |
| Bpl_scaf_33700-0.1 | |
| Bpl_scaf_33700-0.10 | LONG-CHAIN-FATTY-ACID--COA LIGASE |
| Bpl_scaf_33700-0.11 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 25 |
| Bpl_scaf_33700-0.18 | |
| Bpl_scaf_33710-0.13 | |
| Bpl_scaf_33710-0.14 | VACUOLAR CALCIUM ION TRANSPORTER |
| Bpl_scaf_33710-0.21 | |
| Bpl_scaf_33725-0.5 | VOLTAGE-GATED POTASSIUM CHANNEL |
| Bpl_scaf_33725-0.6 | VOLTAGE-GATED POTASSIUM CHANNEL |
| Bpl_scaf_33726-0.5 | NEUROTRANSMITTER GATED ION CHANNEL |
| Bpl_scaf_33726-0.6 | ZINC FINGER PROTEIN |
| Bpl_scaf_33726-1.1 | CEREBELLIN-RELATED |
| Bpl_scaf_33726-1.15 | DESTABILASE-RELATED |
| Bpl_scaf_33726-1.17 | CEREBELLIN-RELATED |
| Bpl_scaf_33726-2.0 | CEREBELLIN-RELATED |
| Bpl_scaf_33726-2.1 | |
| Bpl_scaf_33726-2.14 | |
| Bpl_scaf_33726-2.17 | |
| Bpl_scaf_33726-2.2 | CEREBELLIN-RELATED |
| Bpl_scaf_33726-2.20 | |
| Bpl_scaf_33726-2.32 | CEREBELLIN-RELATED |
| Bpl_scaf_33726-2.33 | CEREBELLIN-RELATED |
| Bpl_scaf_33726-2.9 | CEREBELLIN-RELATED |
| Bpl_scaf_33726-4.7 | |
| Bpl_scaf_33726-5.6 | CYCLIC NUCLEOTIDE PHOSPHODIESTERASE |
| Bpl_scaf_33726-5.7 | FYVE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 1 |
| Bpl_scaf_33726-7.2 | PROTEIN CBG24663 |
| Bpl_scaf_33727-0.15 | MOLTING PROTEIN MLT-4 |
| Bpl_scaf_33727-0.19 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| Bpl_scaf_33727-0.20 | BTB/POZ DOMAIN-CONTAINING |
| Bpl_scaf_33727-0.21 | KELCH DOMAIN-CONTAINING PROTEIN 10 |
| Bpl_scaf_33736-0.0 | PROTEIN CBG10425 |
| Bpl_scaf_33736-0.1 |
