Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_33133-1.0 | |
| Bpl_scaf_33133-1.7 | G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_33133-2.16 | DELTA(14)-STEROL REDUCTASE |
| Bpl_scaf_33133-2.9 | - |
| Bpl_scaf_33250-0.8 | CYTOSOLIC CARBOXYPEPTIDASE |
| Bpl_scaf_33250-0.9 | DENN DOMAIN-CONTAINING PROTEIN 4 |
| Bpl_scaf_33250-1.15 | CHYMOTRYPSIN-RELATED |
| Bpl_scaf_33250-1.16 | |
| Bpl_scaf_33250-1.18 | DENN DOMAIN-CONTAINING PROTEIN 4 |
| Bpl_scaf_33250-1.8 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 161 |
| Bpl_scaf_33250-2.5 | TRANS-GOLGI PROTEIN GMX33 |
| Bpl_scaf_33250-3.0 | |
| Bpl_scaf_33250-4.1 | COLLAGEN ALPHA |
| Bpl_scaf_33250-4.3 | ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED |
| Bpl_scaf_33250-5.5 | |
| Bpl_scaf_33250-6.12 | L-COA N-ACYLTRANSFERASE-RELATED |
| Bpl_scaf_33250-6.13 | PBS LYASE HEAT-LIKE PROTEIN |
| Bpl_scaf_33250-7.13 | DELTEX-RELATED |
| Bpl_scaf_33250-7.14 | FIBRONECTIN TYPE 3 AND ANKYRIN REPEAT DOMAINS PROTEIN 1 |
| Bpl_scaf_33250-7.26 | |
| Bpl_scaf_33250-7.27 | DELTEX-RELATED |
| Bpl_scaf_33253-0.0 | AGAP001705-PA |
| Bpl_scaf_33254-0.0 | |
| Bpl_scaf_33254-0.1 | |
| Bpl_scaf_33255-0.0 | |
| Bpl_scaf_33259-0.0 | |
| Bpl_scaf_33261-0.6 | VOLTAGE-GATED CATION CHANNEL CALCIUM AND SODIUM |
| Bpl_scaf_33261-0.8 | VOLTAGE-GATED CATION CHANNEL CALCIUM AND SODIUM |
| Bpl_scaf_33261-1.0 | VOLTAGE-DEPENDENT CALCIUM CHANNEL TYPE A SUBUNIT ALPHA-1 |
| Bpl_scaf_33261-3.1 | L1 TRANSPOSABLE ELEMENT-RELATED |
| Bpl_scaf_33261-3.2 | GLYCOSYLTRANSFERASE 14 FAMILY MEMBER |
| Bpl_scaf_33262-0.1 | |
| Bpl_scaf_33268-0.0 | |
| Bpl_scaf_33269-0.0 | |
| Bpl_scaf_33270-1.23 | MYOSIN HEAVY CHAIN, NON-MUSCLE |
| Bpl_scaf_33270-1.24 | RETINOIC ACID INDUCED 1/TRANSCRIPTION FACTOR 20 |
| Bpl_scaf_33270-1.25 | MYOSIN HEAVY CHAIN, NON-MUSCLE |
| Bpl_scaf_33270-2.3 | MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD1 MITOTIC ARREST DEFICIENT-LIKE PROTEIN 1 |
| Bpl_scaf_33270-2.4 | PROTEASE M14 CARBOXYPEPTIDASE |
| Bpl_scaf_33270-3.12 | HIGH MOBILITY GROUP PROTEIN DSP1 |
| Bpl_scaf_33270-3.14 | SOLUTE CARRIER FAMILY 25 |
| Bpl_scaf_33270-3.49 | |
| Bpl_scaf_33270-3.5 | AGAP001705-PA |
| Bpl_scaf_33270-3.50 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| Bpl_scaf_33270-3.51 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| Bpl_scaf_33270-3.6 | BASIC HELIX-LOOP-HELIX PROTEIN NEUROGENIN-RELATED |
| Bpl_scaf_33270-3.9 | INTER-ALPHA-TRYPSIN INHIBITOR HEAVY CHAIN FAMILY MEMBER |
| Bpl_scaf_33273-0.0 | |
| Bpl_scaf_33273-0.4 | |
| Bpl_scaf_3328-0.14 | ZGC:195170 |
