Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_32514-0.31 | |
| Bpl_scaf_32514-0.4 | |
| Bpl_scaf_32514-0.8 | |
| Bpl_scaf_32516-0.24 | DYNEIN LIGHT CHAIN |
| Bpl_scaf_32516-0.3 | ANKYRIN REPEAT PROTEIN |
| Bpl_scaf_32520-0.4 | COLLAGEN ALPHA |
| Bpl_scaf_32527-0.10 | DNA2/NAM7 HELICASE FAMILY |
| Bpl_scaf_32527-0.9 | DNA2/NAM7 HELICASE FAMILY |
| Bpl_scaf_32527-1.1 | |
| Bpl_scaf_32527-1.13 | 1-AMINOCYCLOPROPANE-1-CARBOXYLATE DEAMINASE-RELATED |
| Bpl_scaf_32527-1.20 | CAMK FAMILY PROTEIN KINASE |
| Bpl_scaf_32527-1.21 | |
| Bpl_scaf_32527-1.23 | TRANSLATIONALLY CONTROLLED TUMOR PROTEIN-RELATED |
| Bpl_scaf_32527-1.6 | SI:CH211-161H7.5-RELATED |
| Bpl_scaf_32527-2.5 | C13ORF1 PROTEIN-RELATED |
| Bpl_scaf_32527-2.6 | TETRATRICOPEPTIDE REPEAT PROTEIN 11 TPR REPEAT PROTEIN 11 |
| Bpl_scaf_32527-2.7 | UNCHARACTERIZED PROTEASOME COMPONENT REGION PCI-CONTAINING |
| Bpl_scaf_32527-3.11 | PEROXIREDOXIN |
| Bpl_scaf_32527-3.12 | FAM124 DOMAIN-CONTAINING PROTEIN-RELATED |
| Bpl_scaf_32527-3.4 | |
| Bpl_scaf_32528-0.4 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_32533-0.1 | |
| Bpl_scaf_32537-0.6 | HEN1 |
| Bpl_scaf_32537-1.10 | HYR DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_32537-3.11 | MYOMEGALIN |
| Bpl_scaf_32537-3.13 | CDK5 REGULATORY SUBUNIT-ASSOCIATED PROTEIN 2 |
| Bpl_scaf_32538-10.8 | KREMEN PROTEIN |
| Bpl_scaf_32538-11.16 | |
| Bpl_scaf_32538-11.17 | |
| Bpl_scaf_32538-11.20 | GALACTOSIDE 2-L-FUCOSYLTRANSFERASE |
| Bpl_scaf_32538-11.21 | PHOSPHOLIPID SCRAMBLASE-RELATED |
| Bpl_scaf_32538-11.23 | |
| Bpl_scaf_32538-11.39 | KREMEN PROTEIN |
| Bpl_scaf_32538-11.40 | KREMEN PROTEIN |
| Bpl_scaf_32538-11.42 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
| Bpl_scaf_32538-2.1 | |
| Bpl_scaf_32538-2.2 | FORKHEAD BOX PROTEIN |
| Bpl_scaf_32538-3.5 | SORBITOL DEHYDROGENASE |
| Bpl_scaf_32538-4.13 | MULTIPLE INOSITOL POLYPHOSPHATE PHOSPHATASE-RELATED |
| Bpl_scaf_32538-4.2 | |
| Bpl_scaf_32538-5.7 | |
| Bpl_scaf_32538-6.16 | MANNOSYL-OLIGOSACCHARIDE GLUCOSIDASE |
| Bpl_scaf_32538-6.18 | |
| Bpl_scaf_32538-6.20 | CARBOHYDRATE BINDING DOMAIN CONTAINING PROTEIN |
| Bpl_scaf_32538-6.22 | CADHERIN-23 |
| Bpl_scaf_32538-7.1 | |
| Bpl_scaf_32538-8.10 | LOC100145250 PROTEIN |
| Bpl_scaf_32538-8.12 | PEROXISOMAL TARGETING SIGNAL 2 RECEPTOR |
| Bpl_scaf_32538-8.13 | SOLUTE CARRIER FAMILY 22 MEMBER 18 |
| Bpl_scaf_32538-8.21 |
