Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_32072-0.6 | UNCHARACTERIZED |
| Bpl_scaf_32086-0.21 | |
| Bpl_scaf_32086-0.23 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_32086-0.24 | |
| Bpl_scaf_32097-0.11 | SI:DKEY-31G6.6 |
| Bpl_scaf_32097-0.16 | SI:DKEY-31G6.6 |
| Bpl_scaf_32097-0.4 | |
| Bpl_scaf_32097-0.5 | L1 TRANSPOSABLE ELEMENT-RELATED |
| Bpl_scaf_32097-0.7 | SGNH_HYDRO DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_32105-0.0 | |
| Bpl_scaf_32105-0.1 | HOMEOBOX PROTEIN HOX |
| Bpl_scaf_3213-0.12 | IG-LIKE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_3213-0.14 | CONTACTIN 5 |
| Bpl_scaf_32132-0.10 | MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED |
| Bpl_scaf_32132-0.13 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| Bpl_scaf_32132-0.7 | ANOCTAMIN |
| Bpl_scaf_32159-0.8 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| Bpl_scaf_32159-0.9 | PUTATIVE-RELATED |
| Bpl_scaf_32170-0.11 | REPLICATION FACTOR A 1, RFA1 |
| Bpl_scaf_32170-0.14 | THAP DOMAIN-CONTAINING |
| Bpl_scaf_32170-0.15 | SI:CH211-108C17.2-RELATED-RELATED |
| Bpl_scaf_32170-0.19 | |
| Bpl_scaf_32170-0.9 | |
| Bpl_scaf_32179-0.3 | |
| Bpl_scaf_32179-0.9 | ALPHA-AMYLASE |
| Bpl_scaf_32188-0.10 | ANION EXCHANGE PROTEIN |
| Bpl_scaf_32188-0.11 | GTPASE, IMAP FAMILY MEMBER-RELATED |
| Bpl_scaf_32193-0.1 | |
| Bpl_scaf_32193-0.2 | |
| Bpl_scaf_32203-0.15 | |
| Bpl_scaf_32203-0.16 | ANTIGEN 332, DBL-LIKE PROTEIN-RELATED |
| Bpl_scaf_32203-0.17 | |
| Bpl_scaf_32203-0.41 | |
| Bpl_scaf_32204-0.12 | G-PROTEIN COUPLED RECEPTOR FAMILY 1 MEMBER |
| Bpl_scaf_32204-0.8 | COILED-COIL DOMAIN-CONTAINING PROTEIN 78 |
| Bpl_scaf_32204-1.13 | SYNAPSE-ASSOCIATED PROTEIN |
| Bpl_scaf_32204-1.20 | DIMETHYLADENOSINE TRANSFERASE |
| Bpl_scaf_32204-1.21 | |
| Bpl_scaf_32204-1.22 | V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT |
| Bpl_scaf_32204-1.23 | |
| Bpl_scaf_32204-1.24 | XK-RELATED PROTEIN |
| Bpl_scaf_32204-2.0 | |
| Bpl_scaf_32204-3.11 | SI:CH211-189E2.2 |
| Bpl_scaf_32204-3.12 | INOSITOL POLYPHOSPHATE KINASE |
| Bpl_scaf_32204-3.27 | |
| Bpl_scaf_32204-4.4 | ANKYRIN REPEAT PROTEIN |
| Bpl_scaf_32204-5.6 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED |
| Bpl_scaf_32204-5.7 | ADHESION G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_32204-6.12 | NUCLEAR INHIBITOR OF PROTEIN PHOSPHATASE-1 |
| Bpl_scaf_32204-6.18 | BAP28 |
