Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_31501-18.5 | MITOCHONDRIAL ATP SYNTHASE B CHAIN |
| Bpl_scaf_31501-18.6 | JNK-INTERACTING PROTEIN 1-LIKE PROTEIN |
| Bpl_scaf_31501-19.19 | RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY |
| Bpl_scaf_31501-19.20 | SORBITOL DEHYDROGENASE |
| Bpl_scaf_31501-19.21 | |
| Bpl_scaf_31501-19.22 | RIBOSOMAL PROTEIN L7AE FAMILY MEMBER |
| Bpl_scaf_31501-2.2 | INSULIN-LIKE PEPTIDE 2-RELATED |
| Bpl_scaf_31501-20.11 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| Bpl_scaf_31501-20.12 | NO EXINE FORMATION 1 |
| Bpl_scaf_31501-20.17 | ZINC FINGER PROTEIN AEBP2 |
| Bpl_scaf_31501-21.10 | CHARGED MULTIVESICULAR BODY PROTEIN |
| Bpl_scaf_31501-21.8 | UNR PROTEIN N-RAS UPSTREAM GENE PROTEIN |
| Bpl_scaf_31501-21.9 | |
| Bpl_scaf_31501-22.13 | BITESIZE, ISOFORM I |
| Bpl_scaf_31501-22.14 | PROTEIN ARGININE N-METHYLTRANSFERASE |
| Bpl_scaf_31501-22.20 | |
| Bpl_scaf_31501-3.2 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_31501-3.4 | |
| Bpl_scaf_31501-5.0 | |
| Bpl_scaf_31501-5.17 | |
| Bpl_scaf_31501-5.23 | SERINE-TYPE ENDOPEPTIDASE INHIBITOR |
| Bpl_scaf_31501-5.25 | |
| Bpl_scaf_31501-6.4 | SPHINGOMYELINASE FAMILY MEMBER |
| Bpl_scaf_31501-6.5 | DEOXYRIBOSE-PHOSPHATE ALDOLASE |
| Bpl_scaf_31501-7.8 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 |
| Bpl_scaf_31501-7.9 | CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED |
| Bpl_scaf_31501-8.1 | |
| Bpl_scaf_31501-8.11 | TRANSCRIPTION INITIATION FACTOR IIE, ALPHA SUBUNIT |
| Bpl_scaf_31501-8.12 | PHOSPHOTYROSINE INTERACTION DOMAIN-CONTAINING FAMILY MEMBER |
| Bpl_scaf_31501-8.4 | |
| Bpl_scaf_31501-9.3 | UNCHARACTERIZED |
| Bpl_scaf_31501-9.5 | |
| Bpl_scaf_31505-0.0 | |
| Bpl_scaf_31505-0.24 | MUCOSA ASSOCIATED LYMPHOID TISSUE LYMPHOMA TRANSLOCATION PROTEIN 1/PARACASPASE |
| Bpl_scaf_31505-0.26 | |
| Bpl_scaf_31505-0.27 | |
| Bpl_scaf_31505-0.29 | |
| Bpl_scaf_31514-0.15 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
| Bpl_scaf_31514-0.19 | |
| Bpl_scaf_31514-0.22 | EPPIN |
| Bpl_scaf_31514-0.9 | AGAP001331-PA-RELATED |
| Bpl_scaf_31520-0.13 | RING FINGER PROTEIN 141-RELATED |
| Bpl_scaf_31520-0.15 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
| Bpl_scaf_31520-0.17 | AMINO ACID TRANSPORTER |
| Bpl_scaf_31520-0.26 | TESTOSTERONE-REGULATED PROTEIN RP2 |
| Bpl_scaf_31535-0.0 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
| Bpl_scaf_31535-0.33 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
| Bpl_scaf_31535-0.45 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
| Bpl_scaf_31535-0.48 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
| Bpl_scaf_31535-0.50 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
