Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_31245-1.17 | NUCLEAR MITOTIC APPARATUS PROTEIN 1-RELATED |
| Bpl_scaf_31245-1.30 | MEIOTIC NUCLEAR DIVISION PROTEIN 1 HOMOLOG |
| Bpl_scaf_31245-2.2 | G PROTEIN-COUPLED RECEPTOR KINASE/RIBOSOMAL PROTEIN S6 KINASE |
| Bpl_scaf_31245-2.8 | |
| Bpl_scaf_31245-2.9 | MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10 |
| Bpl_scaf_31245-4.15 | |
| Bpl_scaf_31245-4.16 | OS10G0105400 PROTEIN |
| Bpl_scaf_31245-4.17 | OS10G0105400 PROTEIN |
| Bpl_scaf_31245-4.19 | |
| Bpl_scaf_31245-4.20 | |
| Bpl_scaf_31245-4.8 | G PROTEIN-COUPLED RECEPTOR KINASE/RIBOSOMAL PROTEIN S6 KINASE |
| Bpl_scaf_31245-4.9 | |
| Bpl_scaf_3125-0.2 | SOLUTE CARRIER FAMILY 25 MEMBER 44 |
| Bpl_scaf_31251-0.0 | |
| Bpl_scaf_31252-0.7 | |
| Bpl_scaf_31252-0.8 | |
| Bpl_scaf_31252-2.0 | |
| Bpl_scaf_31252-2.1 | |
| Bpl_scaf_31252-2.3 | |
| Bpl_scaf_31252-3.8 | BONUS, ISOFORM C-RELATED |
| Bpl_scaf_31252-4.11 | VERTNIN |
| Bpl_scaf_31252-4.13 | MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM10 |
| Bpl_scaf_31252-4.17 | MIP08469P |
| Bpl_scaf_31252-4.21 | N-TERMINAL ACETYLTRANSFERASE-RELATED |
| Bpl_scaf_31252-4.22 | DUF4291 DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_31252-4.23 | TRAF-TYPE ZINC FINGER PROTEIN-RELATED |
| Bpl_scaf_31252-4.43 | |
| Bpl_scaf_31260-0.0 | FRAGILE X MENTAL RETARDATION SYNDROME-RELATED PROTEIN |
| Bpl_scaf_31264-0.11 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_31264-0.12 | |
| Bpl_scaf_31264-0.2 | |
| Bpl_scaf_31264-0.3 | KRAB AND ZINC FINGER DOMAIN-CONTAINING |
| Bpl_scaf_3127-0.5 | COLON CANCER-ASSOCIATED PROTEIN MIC1 |
| Bpl_scaf_3127-0.6 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G |
| Bpl_scaf_3127-1.10 | MITOCHONDRIAL DIVISION PROTEIN 1-RELATED |
| Bpl_scaf_3127-1.11 | |
| Bpl_scaf_3127-1.12 | MICROTUBULE-ASSOCIATED PROTEIN RP/EB FAMILY MEMBER |
| Bpl_scaf_3127-1.13 | CYTOSOLIC CARBOXYPEPTIDASE |
| Bpl_scaf_31275-1.0 | COLLAGEN ALPHA |
| Bpl_scaf_31275-1.1 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_31275-1.15 | |
| Bpl_scaf_31275-2.3 | CYTOCHROME C OXIDASE ASSEMBLY FACTOR 1 HOMOLOG |
| Bpl_scaf_31275-2.5 | PROHIBITIN |
| Bpl_scaf_31275-3.9 | DYNEIN HEAVY CHAIN 1, AXONEMAL-LIKE PROTEIN |
| Bpl_scaf_31275-4.0 | |
| Bpl_scaf_31289-0.5 | WD REPEAT, SAM AND U-BOX DOMAIN-CONTAINING PROTEIN 1 |
| Bpl_scaf_31289-0.6 | LYMPHOID-SPECIFIC HELICASE |
| Bpl_scaf_31289-1.7 | FMRFAMIDE-RELATED PEPTIDES |
| Bpl_scaf_31289-1.8 | |
| Bpl_scaf_31289-1.9 | - |
