Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_30639-5.2 | FERREDOXIN-RELATED |
| Bpl_scaf_30639-5.7 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
| Bpl_scaf_30639-5.8 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
| Bpl_scaf_30644-0.2 | ZGC:195170 |
| Bpl_scaf_30644-0.5 | SI:CH211-108C17.2-RELATED-RELATED |
| Bpl_scaf_30658-0.11 | |
| Bpl_scaf_30658-0.12 | |
| Bpl_scaf_30681-0.2 | |
| Bpl_scaf_30681-0.8 | |
| Bpl_scaf_30682-0.17 | G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_30682-0.18 | |
| Bpl_scaf_30682-0.5 | |
| Bpl_scaf_30682-1.1 | |
| Bpl_scaf_30682-1.13 | |
| Bpl_scaf_30682-1.2 | |
| Bpl_scaf_30682-1.3 | G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_30682-2.1 | |
| Bpl_scaf_30682-2.17 | |
| Bpl_scaf_30682-2.6 | |
| Bpl_scaf_30682-2.9 | |
| Bpl_scaf_30682-3.13 | DAP3-BINDING CELL DEATH ENHANCER 1 |
| Bpl_scaf_30682-4.8 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| Bpl_scaf_30682-4.9 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| Bpl_scaf_30682-5.32 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| Bpl_scaf_30682-5.34 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| Bpl_scaf_30682-5.35 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| Bpl_scaf_30682-5.36 | |
| Bpl_scaf_30688-0.1 | |
| Bpl_scaf_30688-0.7 | SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED |
| Bpl_scaf_30699-0.11 | CYTOCHROME P450 FAMILY 46 SUBFAMILY A |
| Bpl_scaf_30699-0.15 | CYTOCHROME P450 FAMILY 46 SUBFAMILY A |
| Bpl_scaf_30714-0.15 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
| Bpl_scaf_30714-0.17 | |
| Bpl_scaf_30714-0.18 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
| Bpl_scaf_30726-0.10 | |
| Bpl_scaf_30726-0.11 | |
| Bpl_scaf_30726-0.14 | |
| Bpl_scaf_30726-0.4 | |
| Bpl_scaf_30737-0.11 | |
| Bpl_scaf_30737-0.13 | |
| Bpl_scaf_30765-0.11 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| Bpl_scaf_30765-0.14 | |
| Bpl_scaf_30765-0.35 | |
| Bpl_scaf_30775-0.0 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
| Bpl_scaf_30775-0.5 | DEATH DOMAIN-CONTAINING PROTEIN CRADD |
| Bpl_scaf_30785-0.0 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
| Bpl_scaf_30785-0.3 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Bpl_scaf_30786-1.11 | PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED |
| Bpl_scaf_30786-1.2 | |
| Bpl_scaf_30786-3.18 | AGAP001705-PA |
