Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_30173-7.0 | PATHOGENESIS-RELATED FAMILY PROTEIN |
| Bpl_scaf_30173-7.2 | VERTNIN |
| Bpl_scaf_30173-7.25 | PATHOGENESIS-RELATED FAMILY PROTEIN |
| Bpl_scaf_30173-7.32 | PATHOGENESIS-RELATED FAMILY PROTEIN |
| Bpl_scaf_30174-0.16 | METHYLTRANSFERASE-LIKE PROTEIN 24 |
| Bpl_scaf_30174-0.19 | METHYLTRANSFERASE-LIKE PROTEIN 24 |
| Bpl_scaf_30174-0.20 | |
| Bpl_scaf_30174-0.4 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |
| Bpl_scaf_30175-0.13 | |
| Bpl_scaf_30175-0.14 | CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 18 |
| Bpl_scaf_30175-1.1 | UNCHARACTERIZED |
| Bpl_scaf_30175-1.4 | CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 18 |
| Bpl_scaf_30175-2.10 | ATP-BINDING CASSETTE ABC TRANSPORTER-RELATED |
| Bpl_scaf_30175-2.11 | ATP-DEPENDENT RNA HELICASE DBP3 |
| Bpl_scaf_30175-2.13 | TTC17 PROTEIN |
| Bpl_scaf_30175-2.9 | PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47 |
| Bpl_scaf_30175-3.0 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |
| Bpl_scaf_30175-3.2 | SYNAPTOBREVIN FAMILY MEMBER |
| Bpl_scaf_30175-5.7 | PAIRED BOX PROTEIN PAX-6-RELATED-RELATED |
| Bpl_scaf_30175-5.8 | N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL BIOSYNTHETIC PROTEIN |
| Bpl_scaf_30175-7.11 | |
| Bpl_scaf_30175-7.5 | COLD SHOCK DOMAIN CONTAINING PROTEINS |
| Bpl_scaf_30175-7.6 | DDB1- AND CUL4-ASSOCIATED FACTOR 17 |
| Bpl_scaf_30175-7.8 | |
| Bpl_scaf_30175-7.9 | KRUEPPEL-LIKE TRANSCRIPTION FACTOR |
| Bpl_scaf_30176-0.7 | |
| Bpl_scaf_30176-0.8 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Bpl_scaf_30176-0.9 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Bpl_scaf_30184-0.4 | |
| Bpl_scaf_30185-0.0 | BONUS, ISOFORM C-RELATED |
| Bpl_scaf_30185-0.10 | |
| Bpl_scaf_30185-0.2 | |
| Bpl_scaf_30185-0.9 | BONUS, ISOFORM C-RELATED |
| Bpl_scaf_30185-4.11 | LEUCINE-ZIPPER-LIKE TRANSCRIPTIONAL REGULATOR 1 |
| Bpl_scaf_30185-4.13 | SERINE/THREONINE-PROTEIN KINASE |
| Bpl_scaf_30185-4.5 | CYTOCHROME P450 FAMILY 4 |
| Bpl_scaf_30185-5.10 | FRIZZLED |
| Bpl_scaf_30185-5.5 | ZNF44 PROTEIN |
| Bpl_scaf_30185-5.8 | FRIZZLED |
| Bpl_scaf_30185-6.8 | PHOSPHATIDYLETHANOLAMINE-BINDING PROTEIN |
| Bpl_scaf_30185-6.9 | LIM DOMAIN KINASE 1 |
| Bpl_scaf_30185-7.10 | |
| Bpl_scaf_30185-7.3 | ANKYRIN REPEAT FAMILY PROTEIN |
| Bpl_scaf_30185-7.8 | TEX261 PROTEIN |
| Bpl_scaf_30192-0.3 | AGGRECAN/VERSICAN PROTEOGLYCAN |
| Bpl_scaf_30192-1.8 | THIOPURINE S-METHYLTRANSFERASE |
| Bpl_scaf_30202-0.0 | |
| Bpl_scaf_30205-0.0 | |
| Bpl_scaf_30206-0.0 | |
| Bpl_scaf_30206-0.10 |
