Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_30275-0.0 | |
| Bpl_scaf_30279-0.10 | |
| Bpl_scaf_30279-1.35 | CYTOCHROME P450 508A4-RELATED |
| Bpl_scaf_30279-1.36 | THYMIDINE PHOSPHORYLASE |
| Bpl_scaf_30279-1.6 | SULFOTRANSFERASE SULT |
| Bpl_scaf_30279-2.22 | G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_30279-2.26 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_30279-2.6 | |
| Bpl_scaf_30279-2.7 | ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE |
| Bpl_scaf_30280-0.0 | |
| Bpl_scaf_30281-0.2 | |
| Bpl_scaf_30283-0.2 | DENN DOMAIN-CONTAINING PROTEIN 4 |
| Bpl_scaf_30287-0.3 | OS10G0105400 PROTEIN |
| Bpl_scaf_30290-0.4 | SERINE PROTEASE INHIBITOR, SERPIN |
| Bpl_scaf_30290-0.5 | INACTIVE HYDROXYSTEROID DEHYDROGENASE-LIKE PROTEIN 1 |
| Bpl_scaf_30290-2.0 | |
| Bpl_scaf_30290-2.10 | RFX TRANSCRIPTION FACTOR FAMILY |
| Bpl_scaf_30290-2.13 | CYTOCHROME P450 FAMILY 3 |
| Bpl_scaf_30290-2.15 | ARYLSULFATASE |
| Bpl_scaf_30291-0.20 | TNF RECEPTOR ASSOCIATED FACTOR |
| Bpl_scaf_30291-0.4 | ADP RIBOSYLATION FACTOR-RELATED |
| Bpl_scaf_30291-0.5 | PEPTIDE CHAIN RELEASE FACTOR |
| Bpl_scaf_30291-0.7 | SYNAPTOTAGMIN |
| Bpl_scaf_30291-1.17 | SHC TRANSFORMING PROTEIN |
| Bpl_scaf_30291-1.2 | TRANSPOSABLE ELEMENT-RELATED |
| Bpl_scaf_30291-1.7 | UBIQUITIN-LIKE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_30291-1.8 | UBIQUITIN-LIKE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_30291-10.2 | RAS GTPASE-ACTIVATING PROTEIN WITH IQ MOTIF |
| Bpl_scaf_30291-11.10 | |
| Bpl_scaf_30291-12.7 | |
| Bpl_scaf_30291-12.8 | |
| Bpl_scaf_30291-13.0 | |
| Bpl_scaf_30291-13.15 | |
| Bpl_scaf_30291-13.8 | NICALIN |
| Bpl_scaf_30291-13.9 | UNCHARACTERIZED |
| Bpl_scaf_30291-14.11 | RING BOX |
| Bpl_scaf_30291-14.5 | CEREBELLIN-RELATED |
| Bpl_scaf_30291-14.7 | TATA BOX-BINDING PROTEIN ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT C |
| Bpl_scaf_30291-14.8 | LEUCINE RICH REPEAT PROTEIN |
| Bpl_scaf_30291-15.2 | SODIUM-BILE ACID COTRANSPORTER |
| Bpl_scaf_30291-17.3 | UNCHARACTERIZED |
| Bpl_scaf_30291-17.5 | GRIP-1 ASSOCIATED PROTEIN 1 |
| Bpl_scaf_30291-18.11 | ALPHA-L-FUCOSIDASE |
| Bpl_scaf_30291-18.4 | |
| Bpl_scaf_30291-18.6 | MONOACYLGLYCEROL LIPASE |
| Bpl_scaf_30291-19.0 | |
| Bpl_scaf_30291-19.3 | TESTIS-SPECIFIC GENE 13 PROTEIN |
| Bpl_scaf_30291-2.11 | |
| Bpl_scaf_30291-2.4 | NANOS PROTEIN |
| Bpl_scaf_30291-2.5 | GLYCOSYLTRANSFERASE |
