About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_29704-0.1
Bpl_scaf_29705-0.0
Bpl_scaf_29705-0.1
Bpl_scaf_29706-0.0
Bpl_scaf_29707-0.3ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL
Bpl_scaf_29708-0.2BONUS, ISOFORM C-RELATED
Bpl_scaf_2971-0.13UBIQUITIN-ACTIVATING ENZYME E1
Bpl_scaf_2971-0.16LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED
Bpl_scaf_2971-0.17LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED
Bpl_scaf_2971-0.6
Bpl_scaf_2971-1.16
Bpl_scaf_2971-1.17
Bpl_scaf_2971-1.18UBIQUITIN-ACTIVATING ENZYME E1
Bpl_scaf_2971-1.27
Bpl_scaf_2971-1.7PRA1 PROTEIN
Bpl_scaf_2971-1.8
Bpl_scaf_29710-0.1
Bpl_scaf_29710-0.4
Bpl_scaf_29713-0.1
Bpl_scaf_29713-0.3
Bpl_scaf_29715-0.5
Bpl_scaf_29716-0.2CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 10
Bpl_scaf_29722-0.0
Bpl_scaf_29723-0.10
Bpl_scaf_29723-0.7NEUROBLAST DIFFERENTIATION-ASSOCIATED PROTEIN AHNAK-LIKE PROTEIN
Bpl_scaf_29723-0.9TRANS-SULFURATION ENZYME FAMILY MEMBER
Bpl_scaf_29723-1.6ANION EXCHANGE PROTEIN
Bpl_scaf_29723-2.1
Bpl_scaf_29723-2.10ANION EXCHANGE PROTEIN
Bpl_scaf_29723-2.9MONOCARBOXYLATE TRANSPORTER
Bpl_scaf_29723-3.21SODIUM/CHLORIDE DEPENDENT TRANSPORTER
Bpl_scaf_29723-3.22DEOXYRIBONUCLEASE TATDN2-RELATED
Bpl_scaf_29723-3.38RFX TRANSCRIPTION FACTOR FAMILY
Bpl_scaf_29723-3.4METALLOPROTEASE INHIBITOR
Bpl_scaf_29723-3.41
Bpl_scaf_29757-0.1FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Bpl_scaf_29766-0.10
Bpl_scaf_29766-0.9
Bpl_scaf_2977-0.6DYNACTIN 1-RELATED MICROTUBULE-BINDING
Bpl_scaf_2977-0.7UNCHARACTERIZED
Bpl_scaf_2977-1.17TOLL-LIKE RECEPTOR
Bpl_scaf_2977-1.23R3H DOMAIN-CONTAINING PROTEIN 4
Bpl_scaf_2977-1.24U3 SMALL NUCLEOLAR RNA INTERACTING PROTEIN 2
Bpl_scaf_2977-1.26LIPID PHOSPHATE PHOSPHATASE
Bpl_scaf_2977-1.27FUKUTIN-RELATED
Bpl_scaf_2977-1.4
Bpl_scaf_2977-1.59
Bpl_scaf_2977-1.60TUBULIN
Bpl_scaf_2977-1.61
Bpl_scaf_2977-1.63TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN
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