Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_29323-0.2 | |
| Bpl_scaf_29333-1.0 | |
| Bpl_scaf_29333-1.1 | |
| Bpl_scaf_29333-2.2 | |
| Bpl_scaf_29333-2.6 | RIBOSOMAL PROTEIN S6 KINASE |
| Bpl_scaf_29333-3.0 | INOSITOL 5-PHOSPHATASE |
| Bpl_scaf_29333-3.10 | METABOTROPIC GLUTAMATE RECEPTOR |
| Bpl_scaf_29333-3.8 | INOSITOL 5-PHOSPHATASE |
| Bpl_scaf_29333-3.9 | RPA-INTERACTING PROTEIN RPAIN |
| Bpl_scaf_29333-4.12 | METABOTROPIC GLUTAMATE RECEPTOR |
| Bpl_scaf_29333-4.7 | METABOTROPIC GLUTAMATE RECEPTOR |
| Bpl_scaf_29333-4.9 | ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL |
| Bpl_scaf_29333-5.10 | TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_29333-5.11 | BLR7054 PROTEIN |
| Bpl_scaf_29333-5.24 | POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING |
| Bpl_scaf_29333-5.25 | |
| Bpl_scaf_29333-5.26 | |
| Bpl_scaf_29333-5.6 | |
| Bpl_scaf_29333-6.24 | MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM22 |
| Bpl_scaf_29333-6.25 | SWAP-70 RECOMBINASE |
| Bpl_scaf_29333-6.27 | MEDIUM-CHAIN SPECIFIC ACYL-COA DEHYDROGENASE, MITOCHONDRIAL-RELATED |
| Bpl_scaf_29333-6.28 | DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER |
| Bpl_scaf_29333-6.29 | HYDROLASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G12880)-RELATED |
| Bpl_scaf_29333-6.30 | DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER |
| Bpl_scaf_29333-6.33 | ELECTRON TRANSFER FLAVOPROTEIN BETA SUBUNIT LYSINE METHYLTRANSFERASE |
| Bpl_scaf_29333-6.42 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_29333-6.44 | ELECTRON TRANSFER FLAVOPROTEIN BETA SUBUNIT LYSINE METHYLTRANSFERASE |
| Bpl_scaf_29333-6.49 | ALPHA- 1,3 -FUCOSYLTRANSFERASE |
| Bpl_scaf_29333-6.50 | |
| Bpl_scaf_29340-0.17 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Bpl_scaf_29340-0.3 | L1 TRANSPOSABLE ELEMENT-RELATED |
| Bpl_scaf_29340-0.4 | GTPASE, IMAP FAMILY MEMBER-RELATED |
| Bpl_scaf_29354-0.14 | CEREBELLIN-RELATED |
| Bpl_scaf_29354-0.20 | CEREBELLIN-RELATED |
| Bpl_scaf_29354-0.21 | CEREBELLIN-RELATED |
| Bpl_scaf_29354-0.25 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER |
| Bpl_scaf_29354-0.27 | CEREBELLIN-RELATED |
| Bpl_scaf_29354-0.37 | CEREBELLIN-RELATED |
| Bpl_scaf_29354-0.38 | |
| Bpl_scaf_29354-0.6 | |
| Bpl_scaf_29371-0.18 | COILED-COIL DOMAIN-CONTAINING PROTEIN 178 |
| Bpl_scaf_29371-0.19 | ATAXIA TELANGIECTASIA MUTATED ATM -RELATED |
| Bpl_scaf_29371-0.27 | CHROMOSOME 6 C6ORF201 HOMOLOG |
| Bpl_scaf_29371-0.29 | PEROXISOMAL BIOGENESIS FACTOR 3 |
| Bpl_scaf_29371-0.30 | ADDITIONAL SEX COMBS LIKE PROTEIN ASXL |
| Bpl_scaf_29375-0.8 | CHITINASE |
| Bpl_scaf_29375-0.9 | |
| Bpl_scaf_29375-1.1 | ZGC:195170 |
| Bpl_scaf_29375-1.20 | ZGC:195170 |
| Bpl_scaf_29375-1.23 |
