About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_29182-0.14PROTEIN DISPATCHED-RELATED
Bpl_scaf_29183-0.3CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER
Bpl_scaf_29183-1.4ZINC FINGER PROTEIN
Bpl_scaf_29183-1.5ZINC FINGER AND SCAN DOMAIN-CONTAINING
Bpl_scaf_29183-1.9RAN BINDING PROTEIN 9-RELATED
Bpl_scaf_29183-2.4TRANSLIN-ASSOCIATED FACTOR X-INTERACTING PROTEIN 1
Bpl_scaf_29183-2.6
Bpl_scaf_29183-3.4REPLICATION FACTOR A 1, RFA1
Bpl_scaf_29183-3.7REPLICATION FACTOR A 1, RFA1
Bpl_scaf_29183-5.4
Bpl_scaf_29187-0.16SIDESTEP PROTEIN
Bpl_scaf_29187-0.18IG-LIKE DOMAIN-CONTAINING PROTEIN
Bpl_scaf_29187-0.19
Bpl_scaf_29187-0.20
Bpl_scaf_29187-0.21IG-LIKE DOMAIN-CONTAINING PROTEIN
Bpl_scaf_29194-0.0
Bpl_scaf_29195-0.2
Bpl_scaf_29203-0.6
Bpl_scaf_29203-0.7-
Bpl_scaf_29203-0.8
Bpl_scaf_29214-0.1
Bpl_scaf_29214-0.2
Bpl_scaf_29229-0.6PROTEIN MMS22-LIKE
Bpl_scaf_2923-1.13SODIUM/DICARBOXYLATE SYMPORTER-RELATED
Bpl_scaf_2923-1.4
Bpl_scaf_29237-0.15
Bpl_scaf_29237-0.16
Bpl_scaf_29237-0.17
Bpl_scaf_2924-0.0
Bpl_scaf_29259-0.10RAS-RELATED PROTEIN RAB
Bpl_scaf_29259-0.12UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
Bpl_scaf_29259-0.13-
Bpl_scaf_29259-0.6THAP DOMAIN-CONTAINING
Bpl_scaf_29264-0.3FMRFAMIDE RECEPTOR-RELATED
Bpl_scaf_29292-0.10F-BOX ONLY PROTEIN 7
Bpl_scaf_29292-0.11LD33804P
Bpl_scaf_29292-0.13EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED
Bpl_scaf_29292-0.16UNCHARACTERIZED
Bpl_scaf_29298-0.10WNT RELATED
Bpl_scaf_29298-0.13WNT RELATED
Bpl_scaf_29307-0.4COLLAGEN ALPHA
Bpl_scaf_29314-0.17
Bpl_scaf_29314-0.19INHIBITOR OF APOPTOSIS
Bpl_scaf_29314-0.20
Bpl_scaf_29314-0.21
Bpl_scaf_29314-0.9
Bpl_scaf_2932-0.0
Bpl_scaf_2932-1.0-
Bpl_scaf_29323-0.11
Bpl_scaf_29323-0.12PROTEIN TORNADO 1
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