About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_29079-0.540S RIBOSOMAL PROTEIN S11 FAMILY MEMBER
Bpl_scaf_29089-0.5PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
Bpl_scaf_29089-0.9PROTEIN DISULFIDE-ISOMERASE C17H9.14C-RELATED
Bpl_scaf_29098-0.0COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
Bpl_scaf_29108-0.0
Bpl_scaf_29108-0.2
Bpl_scaf_2912-0.6RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Bpl_scaf_2912-1.3DIOXYGENASE RV0097-RELATED
Bpl_scaf_2912-1.4LIM DOMAIN KINASE 1
Bpl_scaf_2912-1.8OS02G0815200 PROTEIN
Bpl_scaf_2912-1.9LIM DOMAIN KINASE 1
Bpl_scaf_2913-0.10GLUTAMINASE
Bpl_scaf_2913-0.2
Bpl_scaf_2913-0.9NEUROTRANSMITTER GATED ION CHANNEL
Bpl_scaf_2913-1.27POLYCYSTIN-1
Bpl_scaf_2913-1.33POLYCYSTIN FAMILY MEMBER
Bpl_scaf_29130-0.0
Bpl_scaf_29144-0.0ALPHA KINASE/ELONGATION FACTOR 2 KINASE
Bpl_scaf_29154-0.2APPLE DOMAIN-CONTAINING PROTEIN
Bpl_scaf_29154-0.5GTPASE, IMAP FAMILY MEMBER-RELATED
Bpl_scaf_29155-1.11
Bpl_scaf_29155-1.2
Bpl_scaf_29155-1.3METHYLTRANSFERASE
Bpl_scaf_29155-1.5ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED
Bpl_scaf_29155-2.1
Bpl_scaf_29155-3.0
Bpl_scaf_29155-3.1
Bpl_scaf_29155-3.3
Bpl_scaf_29155-3.4
Bpl_scaf_29155-4.0
Bpl_scaf_29155-4.1
Bpl_scaf_29155-4.3
Bpl_scaf_29155-4.31PROTEIN STAR
Bpl_scaf_29155-4.8
Bpl_scaf_29155-5.0
Bpl_scaf_29155-5.1
Bpl_scaf_29155-5.17PROTEIN STAR
Bpl_scaf_29155-5.36
Bpl_scaf_29155-5.4
Bpl_scaf_29155-5.5
Bpl_scaf_29156-0.2REVERSE TRANSCRIPTASES
Bpl_scaf_29156-0.7RNA BINDING PROTEIN
Bpl_scaf_29166-0.0
Bpl_scaf_29166-0.2SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
Bpl_scaf_29166-0.7SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
Bpl_scaf_29172-0.13
Bpl_scaf_29172-0.21MACROGLOBULIN / COMPLEMENT
Bpl_scaf_29172-0.22MACROGLOBULIN / COMPLEMENT
Bpl_scaf_29182-0.12
Bpl_scaf_29182-0.13PROTEIN DISPATCHED-RELATED
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