Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_28694-1.8 | |
| Bpl_scaf_28707-0.7 | CENTROSOMAL PROTEIN POC5 |
| Bpl_scaf_28712-0.5 | 3-HYDROXYACYL-COA DEHYROGENASE |
| Bpl_scaf_28712-1.10 | |
| Bpl_scaf_28712-1.11 | COPPER AMINE OXIDASE |
| Bpl_scaf_28712-2.12 | IROQUOIS-CLASS HOMEODOMAIN PROTEIN IRX |
| Bpl_scaf_28712-2.7 | 3-KETOACYL-COA THIOLASE, PEROXISOMAL |
| Bpl_scaf_28712-4.18 | NADH DEHYDROGENASE UBIQUINONE FLAVOPROTEIN 2, MITOCHONDRIAL |
| Bpl_scaf_28712-4.19 | UNC-93 RELATED |
| Bpl_scaf_28712-4.8 | PEROXISOMAL SARCOSINE OXIDASE |
| Bpl_scaf_28712-4.9 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 60 |
| Bpl_scaf_28712-5.2 | AMINO ACID TRANSPORTER |
| Bpl_scaf_28712-6.3 | FORKHEAD BOX PROTEIN |
| Bpl_scaf_28712-6.5 | PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE |
| Bpl_scaf_28712-7.0 | FORKHEAD BOX PROTEIN |
| Bpl_scaf_28712-7.7 | GDP-MANNOSE 4,6-DEHYDRATASE |
| Bpl_scaf_28712-7.8 | GDP-MANNOSE 4,6-DEHYDRATASE |
| Bpl_scaf_28712-8.15 | PHOSPHORYLATED CTD INTERACTING FACTOR 1 |
| Bpl_scaf_28712-8.16 | |
| Bpl_scaf_28712-8.26 | MULTIDRUG RESISTANCE PROTEIN |
| Bpl_scaf_28712-8.29 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER |
| Bpl_scaf_28712-8.3 | |
| Bpl_scaf_28712-8.6 | |
| Bpl_scaf_28712-8.8 | SMALL NUCLEAR RIBONUCLEOPROTEIN SM |
| Bpl_scaf_28716-0.6 | |
| Bpl_scaf_28716-0.7 | CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 18 |
| Bpl_scaf_28716-1.12 | |
| Bpl_scaf_28716-1.19 | |
| Bpl_scaf_28716-1.22 | CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 18 |
| Bpl_scaf_28716-1.24 | DEATH DOMAIN-CONTAINING PROTEIN CRADD |
| Bpl_scaf_28720-0.2 | |
| Bpl_scaf_28724-0.10 | METHYLTHIORIBOSE KINASE |
| Bpl_scaf_28724-0.11 | ENDONUCLEASE IV ENDODEOXYRIBONUCLEASE IV |
| Bpl_scaf_28724-0.12 | SGT1 PROTEIN HSGT1 SUPPRESSOR OF GCR2 |
| Bpl_scaf_28724-0.19 | LATE ENDOSOMAL/LYSOSOMAL MP1 INTERACTING PROTEIN |
| Bpl_scaf_28724-1.34 | |
| Bpl_scaf_28724-1.39 | |
| Bpl_scaf_28724-1.40 | |
| Bpl_scaf_28724-1.41 | POLYCYSTIN FAMILY MEMBER |
| Bpl_scaf_28724-1.42 | |
| Bpl_scaf_28724-1.43 | POLYCYSTIN FAMILY MEMBER |
| Bpl_scaf_28724-1.44 | |
| Bpl_scaf_28724-1.45 | |
| Bpl_scaf_28731-0.2 | |
| Bpl_scaf_28734-0.0 | |
| Bpl_scaf_28734-0.1 | |
| Bpl_scaf_28734-1.10 | SCAVENGER RECEPTOR CLASS F |
| Bpl_scaf_28734-1.16 | SIGNAL PEPTIDE PEPTIDASE |
| Bpl_scaf_28734-1.18 | PROTEIN HINDERIN |
| Bpl_scaf_28734-1.19 | DEOXYRIBONUCLEASE II |
