Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_28660-7.17 | OXIDORED-NITRO DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_28660-7.32 | T-CELL ACTIVATION RHO GTPASE ACTIVATING PROTEIN-RELATED |
| Bpl_scaf_28660-7.33 | UNCHARACTERIZED |
| Bpl_scaf_28660-7.36 | UNCHARACTERIZED |
| Bpl_scaf_28660-7.37 | PF6 |
| Bpl_scaf_28676-0.2 | |
| Bpl_scaf_28676-1.20 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED |
| Bpl_scaf_28676-1.22 | DENN DOMAIN-CONTAINING PROTEIN 2 |
| Bpl_scaf_28676-1.23 | NG37 |
| Bpl_scaf_28676-1.31 | |
| Bpl_scaf_28677-0.0 | |
| Bpl_scaf_28677-0.13 | SI:CH211-245H14.1-RELATED |
| Bpl_scaf_28677-0.5 | NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED |
| Bpl_scaf_28677-1.0 | |
| Bpl_scaf_28677-1.19 | GLYCOGEN PHOSPHORYLASE |
| Bpl_scaf_28677-1.20 | GLYCOGEN PHOSPHORYLASE |
| Bpl_scaf_28677-1.9 | CCAAT-BINDING FACTOR-RELATED |
| Bpl_scaf_28677-2.11 | RAS-LIKE FAMILY MEMBER 11 |
| Bpl_scaf_28677-2.6 | ZINC FINGER PROTEIN |
| Bpl_scaf_28677-2.9 | ORIGIN RECOGNITION COMPLEX SUBUNIT 3 |
| Bpl_scaf_28677-3.10 | TAIL-ANCHORED PROTEIN INSERTION RECEPTOR WRB |
| Bpl_scaf_28677-3.6 | C21ORF13-RELATED |
| Bpl_scaf_28677-3.7 | SH3 DOMAIN-BINDING GLUTAMIC ACID-RICH-LIKE PROTEIN |
| Bpl_scaf_28677-4.10 | SNF2/RAD54 HELICASE FAMILY |
| Bpl_scaf_28677-4.9 | NEPHROCYSTIN |
| Bpl_scaf_28677-5.12 | TRINUCLEOTIDE REPEAT-CONTAINING GENE 6 |
| Bpl_scaf_28677-6.16 | ENOYL-COA HYDRATASE-RELATED |
| Bpl_scaf_28677-6.17 | |
| Bpl_scaf_28677-6.18 | LEUCINE-RICH MELANOCYTE DIFFERENTIATION-ASSOCIATED PROTEIN |
| Bpl_scaf_28677-6.25 | HISTONE ACETYLTRANSFERASE |
| Bpl_scaf_28677-7.13 | DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL |
| Bpl_scaf_28677-7.15 | INTERFERON REGULATORY FACTOR |
| Bpl_scaf_28677-7.25 | INTERFERON REGULATORY FACTOR |
| Bpl_scaf_28677-7.27 | |
| Bpl_scaf_28677-7.4 | CDGSH IRON-SULFUR DOMAIN-CONTAINING PROTEIN 1 |
| Bpl_scaf_28678-1.15 | ARYLSULFATASE |
| Bpl_scaf_28678-1.7 | G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_28678-1.8 | G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_28688-0.2 | |
| Bpl_scaf_28688-0.6 | MYOSIN HEAVY CHAIN, NON-MUSCLE |
| Bpl_scaf_28688-0.7 | MYOSIN HEAVY CHAIN, NON-MUSCLE |
| Bpl_scaf_28688-1.11 | MYOSIN HEAVY CHAIN, NON-MUSCLE |
| Bpl_scaf_28688-1.31 | HELICASE WITH DEATH DOMAIN-RELATED |
| Bpl_scaf_28688-1.9 | |
| Bpl_scaf_2869-0.11 | |
| Bpl_scaf_2869-0.7 | EPIMERASE-RELATED |
| Bpl_scaf_28694-0.4 | |
| Bpl_scaf_28694-1.11 | |
| Bpl_scaf_28694-1.6 | REVERSE TRANSCRIPTASES |
| Bpl_scaf_28694-1.7 |
