About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_28286-0.0
Bpl_scaf_28298-0.17ALPHA KINASE/ELONGATION FACTOR 2 KINASE
Bpl_scaf_28311-0.1BANK1/PIK3AP1 FAMILY MEMBER
Bpl_scaf_2833-0.18MOLTING PROTEIN MLT-4
Bpl_scaf_2833-0.3NF-KAPPA-B INHIBITOR ALPHA
Bpl_scaf_2833-0.5ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED
Bpl_scaf_28331-0.5
Bpl_scaf_28331-0.6INHIBITOR OF APOPTOSIS
Bpl_scaf_28335-0.5
Bpl_scaf_28335-0.9
Bpl_scaf_2836-0.2SPHINGOMYELIN PHOSPHODIESTERASE 4
Bpl_scaf_28361-0.10NEPHRIN
Bpl_scaf_28361-0.5
Bpl_scaf_28361-0.6
Bpl_scaf_28369-0.6SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER
Bpl_scaf_28373-0.7
Bpl_scaf_28373-0.9
Bpl_scaf_28381-0.0
Bpl_scaf_28381-0.1
Bpl_scaf_28381-0.2
Bpl_scaf_28381-0.3
Bpl_scaf_28382-0.14UNNAMED PRODUCT
Bpl_scaf_28382-0.15
Bpl_scaf_28382-0.16
Bpl_scaf_28382-1.12PROTEIN HEATR9
Bpl_scaf_28382-1.17LITHOSTATHINE
Bpl_scaf_28382-1.1840S RIBOSOMAL PROTEIN S15A
Bpl_scaf_28382-1.19CYSTEINE PROTEASE FAMILY C1-RELATED
Bpl_scaf_28382-2.0
Bpl_scaf_28382-2.14
Bpl_scaf_28382-2.3KUNITZ-TYPE PROTEASE INHIBITOR-RELATED
Bpl_scaf_28382-2.8
Bpl_scaf_28382-3.15KUNITZ-TYPE PROTEASE INHIBITOR-RELATED
Bpl_scaf_28382-3.2
Bpl_scaf_28382-3.3KUNITZ-TYPE PROTEASE INHIBITOR-RELATED
Bpl_scaf_28382-4.1
Bpl_scaf_28382-4.4ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Bpl_scaf_28382-4.6
Bpl_scaf_28382-4.8
Bpl_scaf_28401-0.2EPHRIN TYPE-B RECEPTOR
Bpl_scaf_28412-0.7CELL FATE DETERMINING PROTEIN MAB21-RELATED
Bpl_scaf_28421-0.0ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED
Bpl_scaf_28421-0.5ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED
Bpl_scaf_28430-0.0
Bpl_scaf_28438-0.4PEPTIDYLPROLYL ISOMERASE
Bpl_scaf_28438-0.6
Bpl_scaf_28453-0.2
Bpl_scaf_28453-0.4NITRILASE-RELATED
Bpl_scaf_28453-0.9
Bpl_scaf_2846-0.14
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