Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_27950-0.17 | GLYCOSYLTRANSFERASE 14 FAMILY MEMBER |
| Bpl_scaf_27950-0.28 | BONUS, ISOFORM C-RELATED |
| Bpl_scaf_27950-0.29 | BONUS, ISOFORM C-RELATED |
| Bpl_scaf_27950-0.30 | BONUS, ISOFORM C-RELATED |
| Bpl_scaf_27950-0.6 | BONUS, ISOFORM C-RELATED |
| Bpl_scaf_27950-0.7 | PHOSPHATIDYLINOSITOL SYNTHASE |
| Bpl_scaf_27959-0.17 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
| Bpl_scaf_27959-0.18 | |
| Bpl_scaf_27959-0.19 | |
| Bpl_scaf_27963-0.6 | CAMP-REGULATED PHOSPHOPROTEIN 21 RELATED R3H DOMAIN CONTAINING PROTEIN |
| Bpl_scaf_27972-0.15 | - |
| Bpl_scaf_27972-0.2 | |
| Bpl_scaf_27979-0.0 | |
| Bpl_scaf_27979-0.1 | OSJNBA0004B13.7 PROTEIN |
| Bpl_scaf_27979-0.11 | |
| Bpl_scaf_27979-0.2 | |
| Bpl_scaf_27987-1.1 | TYROSINE-PROTEIN PHOSPHATASE C15H7.3-RELATED |
| Bpl_scaf_27987-1.12 | |
| Bpl_scaf_27987-1.13 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_27998-0.1 | ZINC FINGER AND SCAN DOMAIN-CONTAINING |
| Bpl_scaf_27998-0.12 | 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED |
| Bpl_scaf_27998-0.13 | 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED |
| Bpl_scaf_27998-0.19 | 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED |
| Bpl_scaf_27998-0.5 | |
| Bpl_scaf_27998-1.12 | 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED |
| Bpl_scaf_27998-1.13 | OS05G0521000 PROTEIN |
| Bpl_scaf_28008-0.5 | TUDOR DOMAIN CONTAINING PROTEIN |
| Bpl_scaf_28008-1.6 | PROTEIN TAG-278-RELATED |
| Bpl_scaf_28009-0.14 | HYPOTHETICAL PROTEIN LOC691189 |
| Bpl_scaf_28009-1.19 | ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED |
| Bpl_scaf_28009-1.9 | |
| Bpl_scaf_28020-1.18 | |
| Bpl_scaf_28020-1.19 | APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR. |
| Bpl_scaf_28020-1.20 | APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR. |
| Bpl_scaf_28020-1.21 | APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR. |
| Bpl_scaf_28030-0.16 | |
| Bpl_scaf_28030-0.17 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_28030-1.14 | |
| Bpl_scaf_28030-1.15 | |
| Bpl_scaf_28030-1.16 | |
| Bpl_scaf_28030-1.17 | SCAVENGER RECEPTOR CLASS F |
| Bpl_scaf_28030-1.9 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_28034-0.1 | |
| Bpl_scaf_28039-0.8 | |
| Bpl_scaf_28039-1.27 | |
| Bpl_scaf_28039-1.28 | |
| Bpl_scaf_28039-1.30 | CYTOCHROME P450 FAMILY 4 |
| Bpl_scaf_28039-1.32 | |
| Bpl_scaf_28039-1.8 | APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR. |
| Bpl_scaf_28039-1.9 |
