Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_27297-1.13 | |
| Bpl_scaf_27297-1.2 | |
| Bpl_scaf_27297-1.4 | CHITINASE |
| Bpl_scaf_27301-0.3 | 30S RIBOSOMAL PROTEIN S1 |
| Bpl_scaf_27306-0.0 | |
| Bpl_scaf_27306-0.3 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| Bpl_scaf_27306-1.13 | |
| Bpl_scaf_27306-1.15 | EXOSOME COMPLEX COMPONENT |
| Bpl_scaf_27306-1.18 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| Bpl_scaf_27306-1.19 | HECT DOMAIN UBIQUITIN-PROTEIN LIGASE |
| Bpl_scaf_27306-1.27 | CARBONIC ANHYDRASE |
| Bpl_scaf_27307-0.11 | CARBOXYLIC ESTER HYDROLASE |
| Bpl_scaf_27307-0.4 | CARBOXYLIC ESTER HYDROLASE |
| Bpl_scaf_27307-1.10 | PROGRAMMED CELL DEATH PROTEIN 7 |
| Bpl_scaf_27307-1.4 | PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANYLGERANYL TRANSFERASE ALPHA SUBUNIT |
| Bpl_scaf_27307-1.9 | |
| Bpl_scaf_27307-2.2 | |
| Bpl_scaf_27307-3.13 | SMALL CONDUCTANCE CALCIUM-ACTIVATED POTASSIUM CHANNEL |
| Bpl_scaf_27307-3.4 | |
| Bpl_scaf_27307-4.0 | SMALL CONDUCTANCE CALCIUM-ACTIVATED POTASSIUM CHANNEL |
| Bpl_scaf_27307-5.1 | |
| Bpl_scaf_27307-5.5 | VESICLE PROTEIN SORTING-ASSOCIATED |
| Bpl_scaf_27307-6.12 | SODIUM-DEPENDENT GLUCOSE TRANSPORTER 1 |
| Bpl_scaf_27307-6.6 | PROTEIN ABHD11 |
| Bpl_scaf_27307-7.11 | |
| Bpl_scaf_27307-8.17 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_27307-8.2 | ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_27307-8.5 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_27307-9.6 | |
| Bpl_scaf_27307-9.7 | |
| Bpl_scaf_27314-0.5 | |
| Bpl_scaf_27314-1.1 | DUF614 FAMILY PROTEIN-RELATED |
| Bpl_scaf_27314-2.0 | |
| Bpl_scaf_27314-2.14 | PIKACHURIN-LIKE PROTEIN |
| Bpl_scaf_27314-2.20 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| Bpl_scaf_27314-2.23 | - |
| Bpl_scaf_2732-0.4 | |
| Bpl_scaf_2732-0.5 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 |
| Bpl_scaf_27320-0.2 | KILLER CELL LECTIN-LIKE RECEPTOR SUBFAMILY F MEMBER 2 |
| Bpl_scaf_27325-0.1 | |
| Bpl_scaf_27325-0.2 | |
| Bpl_scaf_27325-1.6 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| Bpl_scaf_27325-1.7 | REGUCALCIN |
| Bpl_scaf_27325-2.11 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 13B |
| Bpl_scaf_27325-2.20 | |
| Bpl_scaf_27325-2.6 | APPLE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_27325-2.9 | WD REPEAT-CONTAINING PROTEIN 48 |
| Bpl_scaf_2733-0.2 | |
| Bpl_scaf_2733-0.6 | SIGNAL PEPTIDE, CUB AND EGF-LIKE DOMAIN-CONTAINING |
| Bpl_scaf_2733-1.13 |
