Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_27116-3.6 | THAP DOMAIN PROTEIN |
| Bpl_scaf_27116-4.0 | 5-HYDROXYTRYPTAMINE RECEPTOR |
| Bpl_scaf_27116-4.7 | FATTY ACID ACYL TRANSFERASE-RELATED |
| Bpl_scaf_27116-6.20 | COLLAGEN ALPHA |
| Bpl_scaf_27116-6.22 | COLLAGEN ALPHA |
| Bpl_scaf_27116-6.26 | COLLAGEN ALPHA |
| Bpl_scaf_2713-0.3 | |
| Bpl_scaf_2713-0.5 | |
| Bpl_scaf_27131-0.2 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_27131-0.6 | CDK5 REGULATORY SUBUNIT-ASSOCIATED PROTEIN 3 |
| Bpl_scaf_2714-0.0 | |
| Bpl_scaf_2714-0.7 | |
| Bpl_scaf_2714-1.6 | SUGAR KINASE |
| Bpl_scaf_2714-2.3 | FIBROBLAST GROWTH FACTOR RECEPTOR |
| Bpl_scaf_2714-3.3 | |
| Bpl_scaf_2714-3.4 | |
| Bpl_scaf_2714-5.13 | ANION EXCHANGE PROTEIN |
| Bpl_scaf_2714-5.18 | |
| Bpl_scaf_2714-5.19 | |
| Bpl_scaf_27141-0.3 | SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER |
| Bpl_scaf_27147-0.10 | |
| Bpl_scaf_27147-0.17 | |
| Bpl_scaf_27147-0.9 | |
| Bpl_scaf_27157-0.0 | 39S RIBOSOMAL PROTEIN L45, MITOCHONDRIAL |
| Bpl_scaf_27157-0.13 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| Bpl_scaf_27157-0.3 | HEXAMETHYLENE BISACETAMIDE INDUCIBLE 1 |
| Bpl_scaf_27157-0.4 | PCD6 INTERACTING PROTEIN-RELATED |
| Bpl_scaf_27158-0.10 | DYNEIN INTERMEDIATE CHAIN |
| Bpl_scaf_27158-0.11 | |
| Bpl_scaf_27158-0.19 | |
| Bpl_scaf_27158-1.12 | REPRESSOR OF YIELD OF DENV PROTEIN |
| Bpl_scaf_27158-1.17 | MEF2B PROTEIN |
| Bpl_scaf_27158-1.18 | |
| Bpl_scaf_27158-2.13 | REPRESSOR OF YIELD OF DENV PROTEIN |
| Bpl_scaf_27158-2.14 | REPRESSOR OF YIELD OF DENV PROTEIN |
| Bpl_scaf_27158-2.16 | REPRESSOR OF YIELD OF DENV PROTEIN |
| Bpl_scaf_27158-3.10 | MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S27 |
| Bpl_scaf_27158-3.13 | |
| Bpl_scaf_27158-3.14 | HILLARIN |
| Bpl_scaf_27158-3.8 | PERILIPIN |
| Bpl_scaf_27158-4.2 | FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA |
| Bpl_scaf_27158-5.0 | |
| Bpl_scaf_27158-6.23 | NEUROTRANSMITTER GATED ION CHANNEL |
| Bpl_scaf_27158-6.24 | 15-HYDROXYPROSTAGLANDIN DEHYDROGENASE [NAD(+)] |
| Bpl_scaf_27158-6.25 | 15-HYDROXYPROSTAGLANDIN DEHYDROGENASE [NAD(+)] |
| Bpl_scaf_27159-0.7 | DUF614 FAMILY PROTEIN-RELATED |
| Bpl_scaf_27159-0.8 | |
| Bpl_scaf_2716-0.0 | TOLL-LIKE RECEPTOR |
| Bpl_scaf_2716-0.1 | TOLL-LIKE RECEPTOR |
| Bpl_scaf_2716-0.2 | TOLL-LIKE RECEPTOR |
