About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_2723-1.8BONUS, ISOFORM C-RELATED
Bpl_scaf_2723-3.16SPECTRIN REPEAT CONTAINING NUCLEAR ENVELOPE PROTEIN 2
Bpl_scaf_2723-4.12MUSCLE-SPECIFIC PROTEIN 300 KDA, ISOFORM G
Bpl_scaf_2723-5.0
Bpl_scaf_2723-5.12TESTICULAR SOLUBLE ADENYLYL CYCLASE
Bpl_scaf_2723-5.14LD35087P
Bpl_scaf_2723-5.7UBIQUITIN THIOLESTERASE PROTEIN OTUB
Bpl_scaf_27230-0.12HISTONE H4
Bpl_scaf_27230-0.5DUF3504 DOMAIN-CONTAINING PROTEIN
Bpl_scaf_27230-0.8
Bpl_scaf_27230-1.1
Bpl_scaf_27238-0.4MCG48959-RELATED
Bpl_scaf_27238-1.10CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44)
Bpl_scaf_27238-1.11CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44)
Bpl_scaf_27238-1.4
Bpl_scaf_27238-1.5
Bpl_scaf_2724-0.3SYNAPTOTAGMIN
Bpl_scaf_27242-0.0
Bpl_scaf_27248-0.5ISOBUTYRYL-COA DEHYDROGENASE
Bpl_scaf_27248-1.14MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Bpl_scaf_27248-1.16ARGININE/SERINE-RICH PROTEIN PNISR
Bpl_scaf_27248-1.17MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Bpl_scaf_27248-1.18-
Bpl_scaf_27248-1.31METHYLTRANSFERASE
Bpl_scaf_27248-1.6UNCHARACTERIZED
Bpl_scaf_27256-0.11PREFOLDIN SUBUNIT 3
Bpl_scaf_27256-0.2
Bpl_scaf_27256-0.7CULLIN
Bpl_scaf_27256-0.8DNA-DIRECTED RNA POLYMERASE SUBUNIT K
Bpl_scaf_27256-0.9CULLIN
Bpl_scaf_27256-1.4DIAMINOPIMELATE DECARBOXYLASE
Bpl_scaf_27256-1.5BONUS, ISOFORM C-RELATED
Bpl_scaf_27256-1.6
Bpl_scaf_27266-0.4MATRIX PROTEIN, PUTATIVE-RELATED
Bpl_scaf_27272-0.0PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Bpl_scaf_27272-0.5BONUS, ISOFORM C-RELATED
Bpl_scaf_27272-0.9ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Bpl_scaf_27272-1.3D-GLUCURONYL C5-EPIMERASE
Bpl_scaf_27273-0.2
Bpl_scaf_27281-0.0RNA BINDING PROTEIN
Bpl_scaf_27288-0.0PROTEIN CBG23764
Bpl_scaf_27288-1.16ANKYRIN REPEAT FAMILY PROTEIN
Bpl_scaf_27288-1.17
Bpl_scaf_27288-1.18
Bpl_scaf_27288-1.20
Bpl_scaf_27288-1.22ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED
Bpl_scaf_27288-1.7
Bpl_scaf_27297-0.5
Bpl_scaf_27297-0.6MEDIUM-CHAIN SPECIFIC ACYL-COA DEHYDROGENASE, MITOCHONDRIAL-RELATED
Bpl_scaf_27297-1.1
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