Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_2733-1.7 | NATRIURETIC PEPTIDE RECEPTOR 3-RELATED |
| Bpl_scaf_2733-2.2 | |
| Bpl_scaf_2733-2.7 | OXIDASE/PEROXIDASE |
| Bpl_scaf_2733-2.8 | NADPH OXIDASE |
| Bpl_scaf_2733-2.9 | NADPH OXIDASE |
| Bpl_scaf_2733-3.8 | OXIDASE/PEROXIDASE |
| Bpl_scaf_2733-5.10 | CELL FATE DETERMINING PROTEIN MAB21-RELATED |
| Bpl_scaf_2733-5.12 | TUBULIN POLYGLUTAMYLASE COMPLEX SUBUNIT 2 |
| Bpl_scaf_2733-5.13 | ZINC FINGER RNA-BINDING PROTEIN |
| Bpl_scaf_2733-5.14 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
| Bpl_scaf_2733-5.23 | RAS-LIKE FAMILY MEMBER 11 |
| Bpl_scaf_27333-0.0 | FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER |
| Bpl_scaf_27334-0.8 | |
| Bpl_scaf_27334-0.9 | TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER |
| Bpl_scaf_27334-1.9 | TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER |
| Bpl_scaf_27334-2.14 | FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER |
| Bpl_scaf_27334-2.15 | FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER |
| Bpl_scaf_27334-2.16 | IQ CALMODULIN-BINDING MOTIF CONTAINING PROTEIN 1 |
| Bpl_scaf_27340-0.1 | |
| Bpl_scaf_27343-0.15 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_27343-0.16 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Bpl_scaf_27343-1.0 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Bpl_scaf_27343-1.10 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED |
| Bpl_scaf_27343-1.11 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED |
| Bpl_scaf_27343-1.9 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Bpl_scaf_27343-2.18 | |
| Bpl_scaf_27343-2.19 | PROTEIN SIDEKICK |
| Bpl_scaf_27343-2.20 | |
| Bpl_scaf_27343-2.25 | |
| Bpl_scaf_27343-2.9 | |
| Bpl_scaf_2740-0.11 | MOLTING PROTEIN MLT-4 |
| Bpl_scaf_2740-0.4 | |
| Bpl_scaf_2740-0.5 | |
| Bpl_scaf_27487-0.3 | NUCLEOPROTEIN TPR-RELATED |
| Bpl_scaf_27488-0.31 | WD REPEAT DOMAIN 44 |
| Bpl_scaf_27488-0.32 | ZINC FINGER AND SCAN DOMAIN-CONTAINING |
| Bpl_scaf_27488-0.5 | TRANSPOSABLE ELEMENT-RELATED |
| Bpl_scaf_27489-0.12 | SI:DKEY-31G6.6 |
| Bpl_scaf_27489-0.9 | |
| Bpl_scaf_27490-0.2 | USP DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_27492-1.11 | 3-HYDROXYACYL-COA DEHYDROGENASE FAMILY PROTEIN |
| Bpl_scaf_27492-1.12 | 3-HYDROXYACYL-COA DEHYDROGENASE FAMILY PROTEIN |
| Bpl_scaf_27492-1.14 | TRANSCRIPTION TERMINATION FACTOR 2-RELATED |
| Bpl_scaf_27492-1.25 | 3-HYDROXYACYL-COA DEHYDROGENASE FAMILY PROTEIN |
| Bpl_scaf_27493-0.3 | TF-1 CELL APOPTOSIS RELATED PROTEIN-15 |
| Bpl_scaf_27497-0.2 | |
| Bpl_scaf_27503-1.2 | |
| Bpl_scaf_27503-2.4 | NG5 |
| Bpl_scaf_27503-3.5 | NG5 |
| Bpl_scaf_27503-3.6 | NG5 |
