Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_27805-2.3 | |
| Bpl_scaf_27805-2.5 | |
| Bpl_scaf_27805-2.9 | |
| Bpl_scaf_27805-4.5 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_27805-4.7 | |
| Bpl_scaf_27805-5.5 | DEFECTIVE PROBOSCIS EXTENSION RESPONSE DPR -RELATED |
| Bpl_scaf_27805-7.3 | DEFECTIVE PROBOSCIS EXTENSION RESPONSE DPR -RELATED |
| Bpl_scaf_27805-9.14 | GLUCOSYLCERAMIDASE |
| Bpl_scaf_27805-9.27 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_27805-9.28 | DOPAMINE BETA HYDROXYLASE RELATED |
| Bpl_scaf_27805-9.29 | |
| Bpl_scaf_27805-9.30 | D-ALANYL-D-ALANINE-CARBOXYPEPTIDASE/ENDOPEPTIDASE AMPH |
| Bpl_scaf_27811-0.4 | |
| Bpl_scaf_27827-0.0 | |
| Bpl_scaf_27827-0.11 | |
| Bpl_scaf_27827-0.12 | |
| Bpl_scaf_27827-0.13 | SULFOTRANSFERASE SULT |
| Bpl_scaf_27831-0.7 | |
| Bpl_scaf_27841-0.2 | |
| Bpl_scaf_27858-0.0 | |
| Bpl_scaf_27858-0.15 | NB-ARC AND TPR DOMAIN PROTEIN |
| Bpl_scaf_27881-0.5 | APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR. |
| Bpl_scaf_27881-0.6 | COMPLEMENT COMPONENT 1, S SUBCOMPONENT-RELATED |
| Bpl_scaf_27890-0.0 | |
| Bpl_scaf_27890-0.12 | DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE |
| Bpl_scaf_27890-0.14 | BTB/POZ DOMAIN-CONTAINING |
| Bpl_scaf_27890-0.15 | BTB/POZ DOMAIN-CONTAINING |
| Bpl_scaf_27890-0.3 | |
| Bpl_scaf_279-0.4 | CXXC-TYPE ZINC FINGER PROTEIN 1 |
| Bpl_scaf_279-0.5 | ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED |
| Bpl_scaf_279-0.6 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_27902-0.15 | POLYCYSTIN FAMILY MEMBER |
| Bpl_scaf_27902-0.6 | LITHOSTATHINE |
| Bpl_scaf_27915-0.3 | BEN DOMAIN-CONTAINING PROTEIN 3 |
| Bpl_scaf_2792-0.14 | |
| Bpl_scaf_2792-0.17 | DEATH DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_2792-0.19 | |
| Bpl_scaf_2792-0.27 | |
| Bpl_scaf_2792-0.6 | |
| Bpl_scaf_2792-0.7 | |
| Bpl_scaf_27937-0.14 | SRCR DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_27937-0.15 | CEREBELLIN-RELATED |
| Bpl_scaf_27937-0.17 | SRCR DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_27937-0.2 | EMILIN ELASTIN MICROFIBRIL INTERFACE-LOCATED PROTEIN ELASTIN MICROFIBRIL INTERFACER |
| Bpl_scaf_27937-0.36 | KUNITZ-TYPE PROTEASE INHIBITOR-RELATED |
| Bpl_scaf_27937-0.37 | COLLAGEN ALPHA |
| Bpl_scaf_27941-0.5 | C2H2-TYPE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_27941-0.6 | |
| Bpl_scaf_27941-0.7 | |
| Bpl_scaf_27941-0.8 |
