Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_27703-0.13 | |
| Bpl_scaf_27703-0.16 | |
| Bpl_scaf_27712-0.6 | |
| Bpl_scaf_27729-0.14 | VITELLOGENIN-RELATED |
| Bpl_scaf_27729-0.21 | VITELLOGENIN-RELATED |
| Bpl_scaf_27737-0.3 | DNA HELICASE RECQ FAMILY MEMBER |
| Bpl_scaf_27737-0.5 | INHIBITOR OF GROWTH PROTEIN |
| Bpl_scaf_27748-0.3 | |
| Bpl_scaf_27756-0.4 | |
| Bpl_scaf_27769-0.16 | FIBRINOGEN ALPHA CHAIN |
| Bpl_scaf_27769-0.48 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED |
| Bpl_scaf_27769-0.49 | SI:CH211-108C17.2-RELATED-RELATED |
| Bpl_scaf_27769-0.50 | |
| Bpl_scaf_27769-0.9 | |
| Bpl_scaf_2777-0.10 | |
| Bpl_scaf_2777-0.11 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_27770-0.10 | PHOSPHATIDYLINOSITOL GLYCAN, CLASS N |
| Bpl_scaf_27770-0.9 | PHOSPHATIDYLINOSITOL GLYCAN, CLASS N |
| Bpl_scaf_27770-1.8 | UNCHARACTERIZED |
| Bpl_scaf_27770-1.9 | ACYL-COA THIOESTERASE |
| Bpl_scaf_27770-2.14 | BONUS, ISOFORM C-RELATED |
| Bpl_scaf_27770-2.7 | MITOCHONDRIAL RIBOSOMAL PROTEIN L30 |
| Bpl_scaf_27770-2.8 | ACYL-COA SYNTHETASE |
| Bpl_scaf_27770-3.12 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED |
| Bpl_scaf_27770-3.13 | ALCOHOL DEHYDROGENASE |
| Bpl_scaf_27770-3.17 | ALCOHOL DEHYDROGENASE |
| Bpl_scaf_27770-4.14 | ALCOHOL DEHYDROGENASE |
| Bpl_scaf_27770-5.39 | |
| Bpl_scaf_27770-5.49 | |
| Bpl_scaf_27770-5.50 | |
| Bpl_scaf_27770-5.51 | |
| Bpl_scaf_27774-0.2 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED |
| Bpl_scaf_27797-0.4 | NUCLEAR PORE COMPLEX PROTEIN NUP205 |
| Bpl_scaf_27797-0.5 | E3 UFM1-PROTEIN LIGASE 1 |
| Bpl_scaf_27805-0.15 | GLYCOSYLATED LYSOSOMAL MEMBRANE PROTEIN |
| Bpl_scaf_27805-0.17 | |
| Bpl_scaf_27805-0.8 | I[[H]] CHANNEL, ISOFORM E |
| Bpl_scaf_27805-10.12 | SOLUTE CARRIER FAMILY 33 ACETYL-COA TRANSPORTER -RELATED |
| Bpl_scaf_27805-10.13 | ACID CLUSTER PROTEIN 33 |
| Bpl_scaf_27805-10.14 | ANKYRIN REPEAT AND LEM DOMAIN-CONTAINING PROTEIN 1 |
| Bpl_scaf_27805-10.21 | MONOACYLGLYCEROL LIPASE |
| Bpl_scaf_27805-10.9 | |
| Bpl_scaf_27805-11.6 | SERINE INCORPORATOR |
| Bpl_scaf_27805-11.7 | NADPH OXIDASE |
| Bpl_scaf_27805-12.10 | NEUROTRANSMITTER GATED ION CHANNEL |
| Bpl_scaf_27805-12.11 | ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED |
| Bpl_scaf_27805-12.13 | SER/THR-PROTEIN KINASE RIO2 |
| Bpl_scaf_27805-12.36 | LYSM AND PUTATIVE PEPTIDOGLYCAN-BINDING DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_27805-13.28 | NAZO FAMILY MEMBER |
| Bpl_scaf_27805-13.5 | NEUROTRANSMITTER GATED ION CHANNEL |
