Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_26575-0.2 | SOLUTE CARRIER FAMILY 13 MEMBER |
| Bpl_scaf_26578-0.2 | CASPASE REGULATOR, RING FINGER DOMAIN-CONTAINING |
| Bpl_scaf_26582-0.13 | SMALL NUCLEAR RIBONUCLEOPROTEIN SM |
| Bpl_scaf_26582-0.2 | PROTEIN ANKUB1 |
| Bpl_scaf_26582-0.6 | GLYCOSYL HYDROLASE |
| Bpl_scaf_26582-0.8 | F-BOX ONLY PROTEIN 3 |
| Bpl_scaf_26582-1.11 | GUANYLYL CYCLASE |
| Bpl_scaf_26582-1.12 | GLYCOSYL HYDROLASE |
| Bpl_scaf_26582-1.22 | SERINE/THREONINE-PROTEIN KINASE |
| Bpl_scaf_26582-2.9 | |
| Bpl_scaf_2668-0.5 | |
| Bpl_scaf_2668-1.11 | PHOSPHOLIPID ACYLTRANSFERASE |
| Bpl_scaf_2668-1.12 | NUCLEAR PORE COMPLEX PROTEIN NUP93 NUCLEOPORIN NUP93 DEAD EYE PROTEIN |
| Bpl_scaf_2668-1.37 | TRNA-DIHYDROURIDINE(20) SYNTHASE [NAD(P)+]-LIKE |
| Bpl_scaf_2668-1.6 | CASEIN KINASE-RELATED |
| Bpl_scaf_2668-3.3 | 5-OXOPROLINASE RELATED |
| Bpl_scaf_2668-3.4 | 5-OXOPROLINASE RELATED |
| Bpl_scaf_2668-3.6 | ADENOSYLHOMOCYSTEINASE |
| Bpl_scaf_2668-4.26 | LD33804P |
| Bpl_scaf_2668-4.27 | CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 18 |
| Bpl_scaf_2668-4.30 | RABCONNECTIN-3B, ISOFORM A |
| Bpl_scaf_2668-4.40 | |
| Bpl_scaf_2668-4.50 | ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD |
| Bpl_scaf_2668-4.54 | TRANSMEMBRANE PROTEIN WITH METALLOPHOSPHOESTERASE DOMAIN-RELATED |
| Bpl_scaf_2668-4.55 | TRANSMEMBRANE PROTEIN WITH METALLOPHOSPHOESTERASE DOMAIN-RELATED |
| Bpl_scaf_2668-4.56 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Bpl_scaf_267-0.11 | MACROGLOBULIN / COMPLEMENT |
| Bpl_scaf_267-0.8 | MONOCARBOXYLATE TRANSPORTER |
| Bpl_scaf_26738-0.2 | |
| Bpl_scaf_26739-0.16 | POTE ANKYRIN DOMAIN |
| Bpl_scaf_26739-0.17 | |
| Bpl_scaf_26739-0.8 | MORN REPEAT-CONTAINING PROTEIN 4 |
| Bpl_scaf_26739-1.1 | TRANSCRIPTION FACTOR MLR1/2 |
| Bpl_scaf_26739-3.21 | CYTOCHROME P450 26 |
| Bpl_scaf_26739-3.24 | |
| Bpl_scaf_26739-3.28 | URACIL-DNA GLYCOSYLASE |
| Bpl_scaf_26739-4.2 | - |
| Bpl_scaf_26739-5.10 | G PROTEIN-COUPLED RECEPTOR KINASE/RIBOSOMAL PROTEIN S6 KINASE |
| Bpl_scaf_26739-5.11 | TETRATRICOPEPTIDE REPEAT PROTEIN 31 |
| Bpl_scaf_26739-5.38 | ZINC FINGER PROTEIN 142 |
| Bpl_scaf_26739-5.4 | |
| Bpl_scaf_26739-5.5 | |
| Bpl_scaf_26739-5.8 | |
| Bpl_scaf_26740-0.2 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Bpl_scaf_26745-0.12 | |
| Bpl_scaf_26746-0.3 | BONUS, ISOFORM C-RELATED |
| Bpl_scaf_26746-1.0 | |
| Bpl_scaf_26746-1.5 | |
| Bpl_scaf_26746-2.6 | |
| Bpl_scaf_26746-3.0 |
