Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_26374-0.8 | GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2 |
| Bpl_scaf_26396-0.10 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Bpl_scaf_26396-0.8 | MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S22 |
| Bpl_scaf_26396-0.9 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
| Bpl_scaf_26406-0.15 | |
| Bpl_scaf_26406-0.31 | |
| Bpl_scaf_26406-0.32 | |
| Bpl_scaf_26406-0.33 | |
| Bpl_scaf_26407-1.1 | ZINC FINGER, C3HC4 TYPE (RING FINGER) FAMILY PROTEIN |
| Bpl_scaf_26407-1.12 | SACSIN |
| Bpl_scaf_26407-1.4 | SACSIN |
| Bpl_scaf_26407-2.1 | SHIPPO-1-RELATED |
| Bpl_scaf_26407-4.10 | |
| Bpl_scaf_26407-4.12 | EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 6-RELATED |
| Bpl_scaf_26407-4.9 | |
| Bpl_scaf_26407-5.7 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
| Bpl_scaf_26407-6.14 | |
| Bpl_scaf_26407-6.22 | |
| Bpl_scaf_26407-6.23 | UNCHARACTERIZED |
| Bpl_scaf_26407-6.26 | TUBULIN |
| Bpl_scaf_26411-0.7 | POLYCYSTIN FAMILY MEMBER |
| Bpl_scaf_26420-0.15 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Bpl_scaf_26420-0.17 | |
| Bpl_scaf_26426-0.0 | |
| Bpl_scaf_26426-0.15 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_26426-0.17 | SCAVENGER RECEPTOR CLASS F |
| Bpl_scaf_26435-0.18 | MYD88 |
| Bpl_scaf_26435-0.19 | PEROXISOMAL TRANS-2-ENOYL-COA REDUCTASE |
| Bpl_scaf_26435-0.2 | |
| Bpl_scaf_26435-0.22 | 3-HYDROXYISOBUTYRYL-COA HYDROLASE-RELATED |
| Bpl_scaf_26435-0.35 | |
| Bpl_scaf_26435-0.37 | |
| Bpl_scaf_26435-0.40 | |
| Bpl_scaf_26445-0.11 | |
| Bpl_scaf_26445-0.19 | |
| Bpl_scaf_26445-0.27 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
| Bpl_scaf_26445-0.29 | |
| Bpl_scaf_26445-0.9 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_26451-0.7 | ARRESTIN DOMAIN CONTAINING PROTEIN |
| Bpl_scaf_26451-1.12 | ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 2-BINDING PROTEIN |
| Bpl_scaf_26451-1.14 | SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER |
| Bpl_scaf_26451-1.15 | SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER |
| Bpl_scaf_26451-1.23 | SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER |
| Bpl_scaf_26451-1.26 | SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER |
| Bpl_scaf_26452-0.13 | |
| Bpl_scaf_26452-0.14 | |
| Bpl_scaf_26452-1.5 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| Bpl_scaf_26452-1.6 | PHOSPHATASE WITH HOMOLOGY TO TENSIN |
| Bpl_scaf_26452-1.7 | PHOSPHATASE WITH HOMOLOGY TO TENSIN |
| Bpl_scaf_26452-1.8 | F20B24.22 |
