Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_25767-1.16 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_25767-1.18 | |
| Bpl_scaf_25767-1.19 | HILLARIN |
| Bpl_scaf_25767-1.20 | ALPHA-AMYLASE FAMILY MEMBER |
| Bpl_scaf_25767-1.4 | |
| Bpl_scaf_25767-1.9 | INNER MEMBRANE TRANSPORT PROTEIN YAJR |
| Bpl_scaf_25767-10.0 | |
| Bpl_scaf_25767-10.11 | WD40 REPEAT PROTEIN |
| Bpl_scaf_25767-10.20 | FGF RECEPTOR ACTIVATING PROTEIN 1 |
| Bpl_scaf_25767-10.23 | |
| Bpl_scaf_25767-10.24 | UNCHARACTERIZED |
| Bpl_scaf_25767-10.4 | TRNA-AMINOACYLATION COFACTOR ARC1 FAMILY MEMBER |
| Bpl_scaf_25767-10.9 | GM2 GANGLIOSIDE ACTIVATOR PROTEIN |
| Bpl_scaf_25767-2.5 | |
| Bpl_scaf_25767-3.0 | |
| Bpl_scaf_25767-3.2 | |
| Bpl_scaf_25767-3.8 | |
| Bpl_scaf_25767-3.9 | GABA-B RECEPTOR |
| Bpl_scaf_25767-4.0 | |
| Bpl_scaf_25767-4.6 | |
| Bpl_scaf_25767-4.7 | GABA-B RECEPTOR |
| Bpl_scaf_25767-5.2 | |
| Bpl_scaf_25767-5.3 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_25767-5.5 | |
| Bpl_scaf_25767-5.7 | |
| Bpl_scaf_25767-6.5 | BTB/POZ DOMAIN-CONTAINING |
| Bpl_scaf_25767-6.6 | BTB/POZ DOMAIN-CONTAINING |
| Bpl_scaf_25767-9.5 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| Bpl_scaf_258-0.1 | SURFACE ANTIGEN BSPA-LIKE-RELATED |
| Bpl_scaf_258-0.8 | |
| Bpl_scaf_2581-0.4 | GENE 9195-RELATED-RELATED |
| Bpl_scaf_2581-0.5 | INSULIN-LIKE GROWTH FACTOR BINDING PROTEIN,N-TERMINAL |
| Bpl_scaf_2581-1.2 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
| Bpl_scaf_2581-2.10 | AHD DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_2581-2.12 | 28S RIBOSOMAL PROTEIN S36, MITOCHONDRIAL |
| Bpl_scaf_2581-2.6 | ZINC FINGER PROTEIN |
| Bpl_scaf_2581-2.8 | RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR |
| Bpl_scaf_2581-3.7 | CTCL TUMOR ANTIGEN HD-CL-01 |
| Bpl_scaf_2581-3.8 | CTCL TUMOR ANTIGEN HD-CL-01 |
| Bpl_scaf_2581-4.10 | |
| Bpl_scaf_2581-4.16 | TRANSMEMBRANE PROTEIN 127 |
| Bpl_scaf_2581-4.18 | PALMITOYLTRANSFERASE ZDHHC16 |
| Bpl_scaf_2581-4.20 | MEDIATOR COMPLEX SUBUNIT 28 |
| Bpl_scaf_2581-4.36 | LAMIN DM0-RELATED |
| Bpl_scaf_2581-4.37 | GLIAL FIBRILLARY ACIDIC PROTEIN |
| Bpl_scaf_2581-4.38 | |
| Bpl_scaf_2581-4.9 | |
| Bpl_scaf_2583-0.0 | |
| Bpl_scaf_2583-0.3 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_2583-0.4 |
