Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_28862-7.1 | PARKIN COREGULATED GENE PROTEIN PARK2 COREGULATED |
| Bpl_scaf_28862-8.16 | SCHLAFEN |
| Bpl_scaf_28862-8.17 | PROTEIN CBG11604 |
| Bpl_scaf_28862-8.18 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 46 |
| Bpl_scaf_28863-0.3 | NUCLEOLAR COMPLEX 2 AND RAD4-RELATED |
| Bpl_scaf_28864-0.10 | |
| Bpl_scaf_28864-0.7 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| Bpl_scaf_28864-0.9 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| Bpl_scaf_28864-1.0 | LD33804P |
| Bpl_scaf_28864-2.10 | ABC TRANSPORTER G FAMILY MEMBER 28 |
| Bpl_scaf_28864-2.11 | KH DOMAIN CONTAINING RNA BINDING PROTEIN |
| Bpl_scaf_28864-2.18 | DEOXYRIBONUCLEASE TATDN2-RELATED |
| Bpl_scaf_28864-2.4 | ALPHA-PROTEIN KINASE VWKA |
| Bpl_scaf_28864-2.8 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
| Bpl_scaf_28865-0.17 | HOMEOBOX PROTEIN NKX |
| Bpl_scaf_28865-0.18 | EPITHELIAL MEMBRANE PROTEIN-RELATED |
| Bpl_scaf_28865-1.13 | |
| Bpl_scaf_28865-1.2 | PROTEIN YIPPEE-LIKE CG15309-RELATED |
| Bpl_scaf_28865-1.4 | EH DOMAIN |
| Bpl_scaf_28867-0.8 | PROTEIN EVA-1 |
| Bpl_scaf_28868-0.1 | SMG-7 SUPPRESSOR WITH MORPHOLOGICAL EFFECT ON GENITALIA PROTEIN 7 |
| Bpl_scaf_28869-0.0 | |
| Bpl_scaf_28869-0.2 | |
| Bpl_scaf_28869-0.4 | - |
| Bpl_scaf_28869-1.10 | BONUS, ISOFORM C-RELATED |
| Bpl_scaf_28869-1.12 | COLLAGEN ALPHA |
| Bpl_scaf_28869-1.13 | TRAF AND TNF RECEPTOR-ASSOCIATED PROTEIN |
| Bpl_scaf_28869-1.3 | |
| Bpl_scaf_28869-1.6 | |
| Bpl_scaf_28869-2.0 | |
| Bpl_scaf_28869-2.1 | |
| Bpl_scaf_28869-2.14 | |
| Bpl_scaf_28869-2.15 | RADICAL S-ADENOSYL METHIONINE DOMAIN-CONTAINING PROTEIN 2 |
| Bpl_scaf_28869-2.3 | |
| Bpl_scaf_28869-3.15 | RADICAL S-ADENOSYL METHIONINE DOMAIN-CONTAINING PROTEIN 2 |
| Bpl_scaf_28869-3.16 | ACROSIN-RELATED |
| Bpl_scaf_28869-3.17 | FRIZZLED |
| Bpl_scaf_28869-3.18 | |
| Bpl_scaf_28869-3.4 | FRIZZLED |
| Bpl_scaf_28869-3.7 | FRIZZLED |
| Bpl_scaf_28870-0.10 | WD REPEAT-CONTAINING PROTEIN 17 |
| Bpl_scaf_28870-0.11 | GEM-ASSOCIATED PROTEIN 8 |
| Bpl_scaf_28870-0.21 | |
| Bpl_scaf_28870-0.7 | CEREBELLIN-RELATED |
| Bpl_scaf_28870-1.8 | TRANSLATION ELONGATION FACTOR-RELATED |
| Bpl_scaf_28870-10.4 | |
| Bpl_scaf_28870-10.7 | G KINASE ANCHORING PROTEIN 1 |
| Bpl_scaf_28870-11.5 | ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE |
| Bpl_scaf_28870-2.10 | SYNTENIN RELATED |
| Bpl_scaf_28870-2.8 |
