Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_29375-1.7 | |
| Bpl_scaf_29375-1.8 | |
| Bpl_scaf_29376-0.6 | NA+/CA2+ K+ INDEPENDENT EXCHANGER |
| Bpl_scaf_29376-2.12 | NA+/CA2+ K+ INDEPENDENT EXCHANGER |
| Bpl_scaf_29376-2.7 | CHAPERONIN |
| Bpl_scaf_29376-2.9 | COILIN |
| Bpl_scaf_29376-3.3 | BONUS, ISOFORM C-RELATED |
| Bpl_scaf_29376-3.5 | NITRIC OXIDE SYNTHASE-RELATED |
| Bpl_scaf_29376-4.10 | |
| Bpl_scaf_29376-4.11 | |
| Bpl_scaf_29376-4.9 | LEUKOCYTE RECEPTOR CLUSTER LRC MEMBER 1 |
| Bpl_scaf_29376-5.1 | RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR |
| Bpl_scaf_29376-5.8 | TATA-BOX BINDING PROTEIN |
| Bpl_scaf_29376-7.14 | G PROTEIN-COUPLED RECEPTOR KINASE/RIBOSOMAL PROTEIN S6 KINASE |
| Bpl_scaf_29376-7.15 | RIBOSOMAL PROTEIN S6 KINASE |
| Bpl_scaf_29376-7.16 | |
| Bpl_scaf_29376-7.17 | CYTOCHROME C OXIDASE POLYPEPTIDE VIA |
| Bpl_scaf_29378-0.0 | |
| Bpl_scaf_29380-0.2 | SER/THR PROTEIN KINASE ULK4 |
| Bpl_scaf_29380-0.3 | SERINE/THREONINE-KINASE ULK4-LIKE PROTEIN-RELATED |
| Bpl_scaf_29380-1.6 | |
| Bpl_scaf_29380-1.8 | MCG131172, ISOFORM CRA_A |
| Bpl_scaf_29380-1.9 | CRUMBS FAMILY MEMBER |
| Bpl_scaf_2939-0.0 | |
| Bpl_scaf_29394-0.0 | IG(IMMUNOGLOBULIN) AND LRR(LEUCINE RICH REPEAT) DOMAINS |
| Bpl_scaf_29399-1.2 | CYTOCHROME P450 508A4-RELATED |
| Bpl_scaf_29403-0.0 | |
| Bpl_scaf_29405-0.0 | |
| Bpl_scaf_29408-1.13 | SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS |
| Bpl_scaf_29408-1.23 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_29408-1.24 | CGI-41 METHYLTRANSFERASE |
| Bpl_scaf_29408-1.25 | AQUAPORIN OR AQUAGLYCEROPORIN RELATED |
| Bpl_scaf_29418-0.10 | |
| Bpl_scaf_29418-0.14 | |
| Bpl_scaf_29421-0.0 | |
| Bpl_scaf_29421-0.8 | GLYCOPROTEIN HORMONE RECEPTOR |
| Bpl_scaf_29421-1.13 | PERFORIN-LIKE PROTEIN 1 |
| Bpl_scaf_29421-1.14 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Bpl_scaf_29421-1.5 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED |
| Bpl_scaf_29421-1.6 | |
| Bpl_scaf_29432-0.2 | TRYPSIN-RELATED |
| Bpl_scaf_29432-1.22 | LIPOXYGENASE |
| Bpl_scaf_29432-1.23 | LIPOXYGENASE |
| Bpl_scaf_29437-0.3 | ENDOGLIN/TGF-BETA RECEPTOR TYPE III |
| Bpl_scaf_29437-0.4 | ENDOGLIN/TGF-BETA RECEPTOR TYPE III |
| Bpl_scaf_29437-1.15 | |
| Bpl_scaf_29437-1.28 | SRCR DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_29437-1.69 | SRCR DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_29437-1.70 | |
| Bpl_scaf_29437-1.71 | SRCR DOMAIN-CONTAINING PROTEIN |
