Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_29437-1.72 | SRCR DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_29437-1.73 | SRCR DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_29437-1.74 | SRCR DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_29437-1.76 | KUNITZ-TYPE PROTEASE INHIBITOR-RELATED |
| Bpl_scaf_29444-1.1 | |
| Bpl_scaf_2945-0.2 | EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 12 |
| Bpl_scaf_2945-1.10 | |
| Bpl_scaf_2945-1.6 | KUNITZ-TYPE PROTEASE INHIBITOR-RELATED |
| Bpl_scaf_2945-1.8 | PROTEIN PHOSPATASE 3 REGULATORY SUBUNIT B ALPHA ISOFORM TYPE 1 |
| Bpl_scaf_2945-1.9 | PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED |
| Bpl_scaf_29450-0.3 | LD35087P |
| Bpl_scaf_29450-1.0 | KNIRPS-RELATED PROTEIN-RELATED |
| Bpl_scaf_29450-1.2 | KNIRPS-RELATED PROTEIN-RELATED |
| Bpl_scaf_29450-2.1 | |
| Bpl_scaf_29450-2.5 | PROTEIN MEMO1 |
| Bpl_scaf_29468-0.3 | CHST5 PROTEIN |
| Bpl_scaf_29468-1.1 | M-PHASE INDUCER PHOSPHATASE DUAL SPECIFICITY PHOSPHATASE CDC25 |
| Bpl_scaf_29468-1.12 | |
| Bpl_scaf_29468-1.6 | OVOCHYMASE-RELATED |
| Bpl_scaf_29468-2.17 | 5-OXOPROLINASE RELATED |
| Bpl_scaf_29468-2.18 | VALACYCLOVIR HYDROLASE |
| Bpl_scaf_29468-2.27 | |
| Bpl_scaf_29468-2.29 | |
| Bpl_scaf_29468-2.30 | PEFLIN |
| Bpl_scaf_29472-0.0 | |
| Bpl_scaf_29475-0.0 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| Bpl_scaf_29476-0.13 | |
| Bpl_scaf_29476-0.4 | |
| Bpl_scaf_29476-0.5 | |
| Bpl_scaf_29476-1.0 | |
| Bpl_scaf_29476-2.1 | |
| Bpl_scaf_29476-2.15 | |
| Bpl_scaf_29476-2.17 | OXIDASE/PEROXIDASE |
| Bpl_scaf_29476-2.38 | TUBULIN |
| Bpl_scaf_29476-2.4 | |
| Bpl_scaf_29477-0.4 | GLUTATHIONE S-TRANSFERASE RHO |
| Bpl_scaf_29477-1.11 | |
| Bpl_scaf_29477-1.8 | IQ CALMODULIN-BINDING MOTIF CONTAINING PROTEIN 1 |
| Bpl_scaf_29477-2.3 | |
| Bpl_scaf_29477-2.7 | DIACYLGLYCEROL KINASE |
| Bpl_scaf_29477-3.0 | |
| Bpl_scaf_29477-3.4 | ETS |
| Bpl_scaf_29477-4.7 | ORIGIN RECOGNITION COMPLEX SUBUNIT 4 |
| Bpl_scaf_29477-4.8 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
| Bpl_scaf_29477-4.9 | PROTEIN SIDEKICK |
| Bpl_scaf_29477-5.10 | ANGIOTENSIN-CONVERTING ENZYME |
| Bpl_scaf_29477-5.25 | MAJOR FACILITATOR SUPERFAMILY PROTEIN-RELATED |
| Bpl_scaf_29477-5.6 | L1 TRANSPOSABLE ELEMENT-RELATED |
| Bpl_scaf_29477-8.7 | E3 UBIQUITIN-PROTEIN LIGASE CHIP |
| Bpl_scaf_29477-8.8 | NCK-ASSOCIATED PROTEIN 5 |
