Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_29477-9.13 | DIHYDRODIPICOLINATE SYNTHASE |
| Bpl_scaf_29477-9.17 | |
| Bpl_scaf_29478-0.2 | SI:CH211-108C17.2-RELATED-RELATED |
| Bpl_scaf_29482-0.0 | |
| Bpl_scaf_29487-0.15 | |
| Bpl_scaf_29487-0.16 | |
| Bpl_scaf_29487-0.9 | N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE |
| Bpl_scaf_29487-1.17 | KUNITZ-TYPE PROTEASE INHIBITOR-RELATED |
| Bpl_scaf_29487-1.18 | NUCLEAR PROTEIN E3-3 |
| Bpl_scaf_29487-10.16 | SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED |
| Bpl_scaf_29487-10.7 | BTB POZ DOMAIN CONTAINING 7 |
| Bpl_scaf_29487-2.5 | ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE |
| Bpl_scaf_29487-3.10 | 3'(2'),5'-BISPHOSPHATE NUCLEOTIDASE 1 |
| Bpl_scaf_29487-3.11 | SCY1-RELATED S/T PROTEIN KINASE-LIKE |
| Bpl_scaf_29487-4.2 | |
| Bpl_scaf_29487-4.5 | |
| Bpl_scaf_29487-5.10 | MALEYLACETOACETATE ISOMERASE |
| Bpl_scaf_29487-5.33 | CALCIUM BINDING PROTEIN |
| Bpl_scaf_29487-5.8 | TOLL-LIKE RECEPTOR |
| Bpl_scaf_29487-5.9 | DOLICHYL-PHOSPHATE-MANNOSE--PROTEIN MANNOSYLTRANSFERASE |
| Bpl_scaf_29487-6.2 | PALMITOYLTRANSFERASE ZDHHC16 |
| Bpl_scaf_29487-7.5 | PHOSPHATIDYLINOSITOL KINASE |
| Bpl_scaf_29487-8.10 | MYOSIN |
| Bpl_scaf_29487-8.11 | MYOSIN |
| Bpl_scaf_29487-8.6 | ZINC FINGER CONTAINING PROTEIN |
| Bpl_scaf_29487-8.9 | MYOSIN |
| Bpl_scaf_29487-9.8 | |
| Bpl_scaf_29487-9.9 | AGAP003327-PA |
| Bpl_scaf_29489-0.2 | |
| Bpl_scaf_29494-0.0 | |
| Bpl_scaf_29497-1.11 | |
| Bpl_scaf_29497-1.9 | |
| Bpl_scaf_29497-2.10 | |
| Bpl_scaf_2954-0.0 | |
| Bpl_scaf_2955-0.2 | |
| Bpl_scaf_2956-0.2 | CEREBELLIN-RELATED |
| Bpl_scaf_2956-0.4 | CADHERIN-87A |
| Bpl_scaf_2956-1.14 | DED DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_2956-1.18 | |
| Bpl_scaf_2958-0.0 | |
| Bpl_scaf_2961-0.2 | |
| Bpl_scaf_29673-0.3 | 14-3-3 PROTEIN |
| Bpl_scaf_29673-0.5 | TEL2 INTERACTING PROTEIN 1 TTI1 FAMILY MEMBER |
| Bpl_scaf_29674-0.0 | |
| Bpl_scaf_29674-1.19 | ALLOGRAFT INFLAMMATORY FACTOR-1 |
| Bpl_scaf_29674-1.9 | PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR |
| Bpl_scaf_29674-10.1 | SI:CH211-189E2.2 |
| Bpl_scaf_29674-10.15 | G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_29674-10.23 | ANKYRIN REPEAT PROTEIN |
| Bpl_scaf_29674-10.3 | HOMEOBOX PROTEIN CDX |
