About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_31535-0.51
Bpl_scaf_31535-0.53DUF3504 DOMAIN-CONTAINING PROTEIN
Bpl_scaf_31535-0.54
Bpl_scaf_31548-0.7BONUS, ISOFORM C-RELATED
Bpl_scaf_31556-0.16CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44)
Bpl_scaf_31556-0.17OPSIN
Bpl_scaf_31556-0.20ENDONUCLEASE-RELATED
Bpl_scaf_31556-0.22OPSIN
Bpl_scaf_31556-0.23OPSIN
Bpl_scaf_31556-0.38
Bpl_scaf_31556-0.39OPSIN
Bpl_scaf_31556-0.40CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44)
Bpl_scaf_31557-0.10JITTERBUG, ISOFORM N
Bpl_scaf_31557-0.11TRANSCOBALAMIN-1/GASTRIC INTRINSIC FACTOR
Bpl_scaf_31557-1.6BONUS, ISOFORM C-RELATED
Bpl_scaf_31557-1.7RENIN RECEPTOR
Bpl_scaf_31557-1.8TUMOR NECROSIS FACTOR FAMILY MEMBER
Bpl_scaf_31557-2.35AGAP008648-PA
Bpl_scaf_31557-2.37LITHOSTATHINE
Bpl_scaf_31557-2.38SELENOPROTEIN T
Bpl_scaf_31557-2.39BONUS, ISOFORM C-RELATED
Bpl_scaf_31557-2.4RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY
Bpl_scaf_31557-3.4METHIONINE SULFOXIDE REDUCTASE
Bpl_scaf_31557-3.5MATRIX METALLOPROTEINASE
Bpl_scaf_31557-4.2ALPHA-GLUCOSIDASE
Bpl_scaf_31557-6.11DYNEIN HEAVY CHAIN
Bpl_scaf_31557-7.14DYNEIN HEAVY CHAIN
Bpl_scaf_31557-7.15DYNEIN HEAVY CHAIN
Bpl_scaf_31557-7.26
Bpl_scaf_31557-7.27
Bpl_scaf_31567-1.0
Bpl_scaf_31567-1.6OS10G0105400 PROTEIN
Bpl_scaf_31567-1.7OS10G0105400 PROTEIN
Bpl_scaf_31577-0.4
Bpl_scaf_31577-1.10
Bpl_scaf_31577-1.3IG-LIKE DOMAIN-CONTAINING PROTEIN
Bpl_scaf_31577-1.4IG-LIKE DOMAIN-CONTAINING PROTEIN
Bpl_scaf_3159-0.0BONUS, ISOFORM C-RELATED
Bpl_scaf_31592-0.2
Bpl_scaf_31592-0.3
Bpl_scaf_31592-1.11
Bpl_scaf_31592-1.12EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
Bpl_scaf_31592-1.15
Bpl_scaf_31592-1.3
Bpl_scaf_31592-1.9
Bpl_scaf_31595-0.1
Bpl_scaf_31596-1.14MYOTROPHIN
Bpl_scaf_31596-1.15
Bpl_scaf_3160-1.4CYSTEINE-RICH PDF MOTIF DOMAIN-CONTAINING PROTEIN 1
Bpl_scaf_3160-2.4TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN
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