Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_32388-2.8 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12/COP9 SIGNALOSOME COMPLEX SUBUNIT 4 |
| Bpl_scaf_32388-2.9 | ZINC PHOSPHODIESTERASE ELAC PROTEIN 2 |
| Bpl_scaf_32398-0.0 | |
| Bpl_scaf_32398-0.2 | |
| Bpl_scaf_32398-0.7 | DEOXYRIBONUCLEASE TATDN2-RELATED |
| Bpl_scaf_32398-1.0 | |
| Bpl_scaf_32398-1.17 | ATP-DEPENDENT DNA HELICASE |
| Bpl_scaf_32398-1.2 | |
| Bpl_scaf_32398-2.0 | |
| Bpl_scaf_32398-2.1 | |
| Bpl_scaf_32398-2.21 | |
| Bpl_scaf_32398-2.4 | |
| Bpl_scaf_32399-0.3 | SORTILIN RELATED |
| Bpl_scaf_32399-1.10 | ENGULFMENT AND CELL MOTILITY |
| Bpl_scaf_32399-1.11 | 30S RIBOSOMAL PROTEIN S18 |
| Bpl_scaf_32399-1.12 | NUCLEOLAR COMPLEX PROTEIN 3 |
| Bpl_scaf_32399-10.1 | |
| Bpl_scaf_32399-10.2 | ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_32399-2.4 | THREONINE SYNTHASE FAMILY MEMBER |
| Bpl_scaf_32399-2.5 | ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN |
| Bpl_scaf_32399-3.11 | |
| Bpl_scaf_32399-3.15 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6 |
| Bpl_scaf_32399-3.17 | TELOMERIC REPEAT-BINDING FACTOR 2 TERF2 |
| Bpl_scaf_32399-3.24 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6 |
| Bpl_scaf_32399-3.25 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6 |
| Bpl_scaf_32399-4.4 | |
| Bpl_scaf_32399-5.0 | ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_32399-6.1 | |
| Bpl_scaf_32399-6.6 | C20ORF30 PROTEIN |
| Bpl_scaf_32399-7.4 | PENTATRICOPEPTIDE REPEAT DOMAIN-CONTAINING PROTEIN 3 |
| Bpl_scaf_32399-8.6 | ANKYRIN REPEAT FAMILY PROTEIN |
| Bpl_scaf_32399-8.7 | DNA POLYMERASE THETA, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G05260)-RELATED |
| Bpl_scaf_32399-9.2 | |
| Bpl_scaf_32405-0.4 | CADHERIN-23 |
| Bpl_scaf_32409-0.10 | ZINC FINGER PROTEIN |
| Bpl_scaf_32409-1.6 | NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 |
| Bpl_scaf_32409-2.16 | AQUAPORIN |
| Bpl_scaf_32409-2.20 | N-ACETYLGALACTOSAMINYLTRANSFERASE |
| Bpl_scaf_32409-2.21 | |
| Bpl_scaf_32409-2.25 | |
| Bpl_scaf_32409-2.42 | CALPAIN |
| Bpl_scaf_32409-2.43 | |
| Bpl_scaf_32409-2.44 | CALPAIN |
| Bpl_scaf_32409-2.45 | |
| Bpl_scaf_32514-0.12 | |
| Bpl_scaf_32514-0.20 | |
| Bpl_scaf_32514-0.23 | 43 KDA RECEPTOR-ASSOCIATED PROTEIN OF THE SYNAPSE |
| Bpl_scaf_32514-0.28 | |
| Bpl_scaf_32514-0.29 | PLASMINOGEN-RELATED |
| Bpl_scaf_32514-0.30 |
