About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_3328-0.15
Bpl_scaf_3328-0.16SI:CH211-108C17.2-RELATED-RELATED
Bpl_scaf_3328-0.5
Bpl_scaf_33281-0.0
Bpl_scaf_33281-1.11
Bpl_scaf_33281-1.12SI:CH211-262H13.3-RELATED-RELATED
Bpl_scaf_33281-1.9
Bpl_scaf_33281-2.7
Bpl_scaf_33281-3.20
Bpl_scaf_33281-3.21
Bpl_scaf_33281-3.22
Bpl_scaf_33281-3.23
Bpl_scaf_33284-0.1ARPIN
Bpl_scaf_33285-0.2
Bpl_scaf_33285-0.3
Bpl_scaf_33286-0.1CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 18
Bpl_scaf_33288-0.1COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
Bpl_scaf_33291-0.12
Bpl_scaf_33291-0.13ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER
Bpl_scaf_33291-1.1
Bpl_scaf_33291-1.8E3 UBIQUITIN-PROTEIN LIGASE MARCH 2/3 FAMILY MEMBER
Bpl_scaf_33291-2.10TETRATRICOPEPTIDE REPEAT PROTEIN 4
Bpl_scaf_33291-2.8CYSTEINE PROTEASE FAMILY C1-RELATED
Bpl_scaf_33291-2.9DIMETHYLADENOSINE TRANSFERASE
Bpl_scaf_33291-3.17D-AMINO ACID OXIDASE
Bpl_scaf_33291-3.23D-AMINO ACID OXIDASE
Bpl_scaf_33291-3.24D-AMINO ACID OXIDASE
Bpl_scaf_33291-3.25
Bpl_scaf_33291-3.26
Bpl_scaf_33291-3.5
Bpl_scaf_33307-0.4
Bpl_scaf_33315-0.0KUNITZ-TYPE PROTEASE INHIBITOR-RELATED
Bpl_scaf_33343-0.0RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED
Bpl_scaf_33355-0.10PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE
Bpl_scaf_33355-0.9PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE
Bpl_scaf_33373-0.4
Bpl_scaf_33384-0.9VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED
Bpl_scaf_3339-0.5IG-LIKE DOMAIN-CONTAINING PROTEIN
Bpl_scaf_3339-0.6
Bpl_scaf_33393-0.0
Bpl_scaf_33401-0.2MACROGLOBULIN / COMPLEMENT
Bpl_scaf_33401-0.5
Bpl_scaf_33424-0.2GLUTATHIONE S-TRANSFERASE-RELATED
Bpl_scaf_33432-0.4
Bpl_scaf_33432-0.5
Bpl_scaf_33438-0.10
Bpl_scaf_33438-0.11RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Bpl_scaf_33448-0.4ENDOGLIN/TGF-BETA RECEPTOR TYPE III
Bpl_scaf_33448-0.7KUNITZ-TYPE PROTEASE INHIBITOR-RELATED
Bpl_scaf_33454-0.27ANKYRIN REPEAT PROTEIN
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