About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_33596-3.0SOX TRANSCRIPTION FACTOR
Bpl_scaf_33596-4.3SEX PEPTIDE RECEPTOR
Bpl_scaf_33596-4.5IROQUOIS-CLASS HOMEODOMAIN PROTEIN IRX
Bpl_scaf_33596-5.0
Bpl_scaf_33596-5.1IROQUOIS-CLASS HOMEODOMAIN PROTEIN IRX
Bpl_scaf_33596-5.2IROQUOIS-CLASS HOMEODOMAIN PROTEIN IRX
Bpl_scaf_33596-6.11
Bpl_scaf_33596-6.5METHYLTRANSFERASE, FKBM FAMILY PROTEIN
Bpl_scaf_33596-6.8CALCIUM BINDING PROTEIN
Bpl_scaf_33596-7.3CARBONIC ANHYDRASE
Bpl_scaf_33596-7.4CARBONIC ANHYDRASE
Bpl_scaf_33596-8.0
Bpl_scaf_33596-8.5PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Bpl_scaf_33596-9.4CARBONIC ANHYDRASE
Bpl_scaf_33604-0.0
Bpl_scaf_33604-0.1
Bpl_scaf_33604-0.9
Bpl_scaf_33617-0.13
Bpl_scaf_33617-0.5
Bpl_scaf_33623-0.0
Bpl_scaf_33623-0.1
Bpl_scaf_33634-0.0EPIMERASE-RELATED
Bpl_scaf_33634-0.11METHYLTRANSFERASE-LIKE PROTEIN 24
Bpl_scaf_33634-0.12
Bpl_scaf_33634-0.9
Bpl_scaf_33635-0.1
Bpl_scaf_33635-2.0SESQUIPEDALIAN
Bpl_scaf_33635-3.5IMPORTIN BETA
Bpl_scaf_33635-3.6TYROSINASE FAMILY MEMBER
Bpl_scaf_33635-4.6HISTONE-LYSINE N-METHYLTRANSFERASE SETD2
Bpl_scaf_33635-4.7EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1
Bpl_scaf_33635-4.9HISTONE-LYSINE N-METHYLTRANSFERASE SETD2
Bpl_scaf_33635-5.3CROSSVEINLESS 2
Bpl_scaf_33636-0.10
Bpl_scaf_33636-0.13BETA-MANNOSIDASE
Bpl_scaf_33636-0.16CDK5 REGULATORY SUBUNIT-ASSOCIATED PROTEIN 3
Bpl_scaf_33636-0.8
Bpl_scaf_33647-0.3
Bpl_scaf_33647-0.4
Bpl_scaf_33647-0.7
Bpl_scaf_33650-0.11
Bpl_scaf_33650-0.8
Bpl_scaf_33659-0.1
Bpl_scaf_33659-0.13LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED
Bpl_scaf_33659-0.14
Bpl_scaf_33659-0.3
Bpl_scaf_33659-0.9LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED
Bpl_scaf_3366-0.7
Bpl_scaf_3366-0.9RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Bpl_scaf_33669-0.9
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