Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_33740-0.3 | |
| Bpl_scaf_33740-0.5 | LYSINE-SPECIFIC DEMETHYLASE |
| Bpl_scaf_33740-0.7 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| Bpl_scaf_33740-1.3 | ZINC/IRON TRANSPORTER |
| Bpl_scaf_33740-1.8 | GPI TRANSAMIDASE COMPONENT PIG-T-RELATED |
| Bpl_scaf_33740-1.9 | |
| Bpl_scaf_33747-0.3 | INTERFERON-INDUCIBLE GTPASE |
| Bpl_scaf_33747-1.11 | |
| Bpl_scaf_33747-1.13 | |
| Bpl_scaf_33758-0.3 | TYROSINASE FAMILY MEMBER |
| Bpl_scaf_33758-0.8 | ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED |
| Bpl_scaf_33758-1.15 | |
| Bpl_scaf_33758-1.17 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
| Bpl_scaf_33758-1.3 | |
| Bpl_scaf_33758-1.8 | RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR |
| Bpl_scaf_3377-0.0 | |
| Bpl_scaf_3377-0.7 | |
| Bpl_scaf_3377-0.8 | |
| Bpl_scaf_33774-0.11 | |
| Bpl_scaf_33774-0.12 | |
| Bpl_scaf_33774-0.14 | |
| Bpl_scaf_33774-0.3 | |
| Bpl_scaf_33774-1.23 | |
| Bpl_scaf_33774-1.25 | |
| Bpl_scaf_33774-1.26 | C-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 180 |
| Bpl_scaf_33774-1.27 | |
| Bpl_scaf_33774-1.29 | PLASMINOGEN-RELATED |
| Bpl_scaf_33774-1.38 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
| Bpl_scaf_33779-0.3 | 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED |
| Bpl_scaf_3378-0.8 | NEPHRIN |
| Bpl_scaf_3378-0.9 | NEPHRIN |
| Bpl_scaf_3378-2.11 | |
| Bpl_scaf_3378-2.12 | |
| Bpl_scaf_3378-2.13 | |
| Bpl_scaf_3378-3.14 | IG-LIKE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_3378-3.15 | SI:CH211-108C17.2-RELATED-RELATED |
| Bpl_scaf_3378-4.8 | IG-LIKE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_3378-4.9 | IG-LIKE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_3378-5.19 | CARCINOEMBRYONIC ANTIGEN-RELATED CELL ADHESION MOLECULE 8 |
| Bpl_scaf_3378-5.20 | NEPHRIN |
| Bpl_scaf_3378-5.21 | TRANSPOSABLE ELEMENT-RELATED |
| Bpl_scaf_3378-5.30 | CARCINOEMBRYONIC ANTIGEN-RELATED CELL ADHESION MOLECULE 8 |
| Bpl_scaf_3378-5.31 | SI:CH211-108C17.2-RELATED-RELATED |
| Bpl_scaf_3378-5.32 | |
| Bpl_scaf_33783-0.22 | EARLY GAMETOCYTE ENRICHED PHOSPHOPROTEIN EGXP |
| Bpl_scaf_33783-1.100 | PLASMINOGEN-RELATED |
| Bpl_scaf_33783-1.103 | CALCIUM BINDING PROTEIN |
| Bpl_scaf_33783-1.104 | CALCIUM BINDING PROTEIN |
| Bpl_scaf_33783-1.105 | CALCIUM BINDING PROTEIN |
| Bpl_scaf_33783-1.14 | STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3 |
