Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_33997-6.11 | RETINAL ROD RHODOPSIN-SENSITIVE CGMP 3',5'-CYCLIC PHOSPHODIESTERASE DELTA-SUBUNIT |
| Bpl_scaf_33997-6.12 | |
| Bpl_scaf_33997-6.5 | PEROXISOMAL TARGETING SIGNAL 1 RECEPTOR PEX5 |
| Bpl_scaf_33997-8.13 | ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_33997-8.9 | SOLUTE CARRIER FAMILY 2 |
| Bpl_scaf_33997-9.0 | OPSIN |
| Bpl_scaf_33997-9.2 | |
| Bpl_scaf_33997-9.3 | ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_33997-9.4 | ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_33997-9.5 | ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_34-0.3 | ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 |
| Bpl_scaf_34-1.4 | |
| Bpl_scaf_34-1.6 | |
| Bpl_scaf_34-2.6 | BETA-LACTAMASE-RELATED |
| Bpl_scaf_34-2.7 | RIBOSOME RECYCLING FACTOR |
| Bpl_scaf_34-3.10 | NEGATIVE ELONGATION FACTOR COMPLEX MEMBER B |
| Bpl_scaf_34-3.12 | SIALATE O-ACETYLESTERASE |
| Bpl_scaf_34-3.9 | METAXIN RELATED |
| Bpl_scaf_34004-0.2 | |
| Bpl_scaf_34006-0.0 | |
| Bpl_scaf_34008-0.3 | CADHERIN-87A |
| Bpl_scaf_34010-0.0 | |
| Bpl_scaf_34015-0.1 | |
| Bpl_scaf_34019-0.3 | SERINE/THREONINE-PROTEIN KINASE SBK1 |
| Bpl_scaf_34019-3.12 | |
| Bpl_scaf_34019-3.13 | PAIRED BOX PROTEIN PAX-6-RELATED-RELATED |
| Bpl_scaf_34021-0.6 | MITOCHONDRIA-EATING PROTEIN-RELATED |
| Bpl_scaf_34022-0.0 | BONUS, ISOFORM C-RELATED |
| Bpl_scaf_3403-0.13 | SYNAPTOTAGMIN |
| Bpl_scaf_3403-0.6 | DYNEIN REGULATORY COMPLEX SUBUNIT 7 |
| Bpl_scaf_34030-0.3 | ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_34030-2.5 | INHIBITOR OF APOPTOSIS |
| Bpl_scaf_34030-2.6 | UBIQUITIN INTERACTION MOTIF-CONTAINING PROTEIN 1 |
| Bpl_scaf_34036-0.4 | RUVB-RELATED REPTIN AND PONTIN |
| Bpl_scaf_34039-0.5 | BETA-HEXOSAMINIDASE |
| Bpl_scaf_34040-0.0 | |
| Bpl_scaf_34041-0.7 | MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7-RELATED |
| Bpl_scaf_34041-0.8 | MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7-RELATED |
| Bpl_scaf_34041-1.4 | DELTA ADAPTIN-RELATED |
| Bpl_scaf_34041-2.0 | |
| Bpl_scaf_34041-2.3 | |
| Bpl_scaf_34041-3.0 | XK-RELATED PROTEIN |
| Bpl_scaf_34041-3.2 | UNCHARACTERIZED |
| Bpl_scaf_34041-3.5 | |
| Bpl_scaf_34041-4.15 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| Bpl_scaf_34041-4.26 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| Bpl_scaf_34041-4.5 | NUCLEAR INHIBITOR OF PROTEIN PHOSPHATASE-1 |
| Bpl_scaf_34041-4.7 | APPLE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_34048-0.1 | AGAP008228-PA |
| Bpl_scaf_34060-0.4 | UNCHARACTERIZED |
