About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_34088-0.1
Bpl_scaf_34102-0.4VACUOLAR PROTEIN 8
Bpl_scaf_34112-0.4BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
Bpl_scaf_34112-0.6
Bpl_scaf_34127-0.12AGAP001331-PA-RELATED
Bpl_scaf_34127-0.7PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Bpl_scaf_34127-0.9SCHLAFEN
Bpl_scaf_3413-0.10
Bpl_scaf_3413-0.11
Bpl_scaf_3413-0.12
Bpl_scaf_3413-0.8RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING
Bpl_scaf_34133-0.15CRUMBS FAMILY MEMBER
Bpl_scaf_34141-0.1
Bpl_scaf_34142-0.21
Bpl_scaf_34142-0.22
Bpl_scaf_34142-1.19
Bpl_scaf_34142-1.20
Bpl_scaf_34142-2.11GLUTATHIONE S-TRANSFERASE-RELATED
Bpl_scaf_34142-2.12
Bpl_scaf_34142-3.0
Bpl_scaf_34142-3.10ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED
Bpl_scaf_34142-3.2ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED
Bpl_scaf_34142-4.1
Bpl_scaf_34142-4.11BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
Bpl_scaf_34142-4.12CXC DOMAIN-CONTAINING PROTEIN-RELATED
Bpl_scaf_34142-4.23BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
Bpl_scaf_34142-4.35
Bpl_scaf_34142-4.46THAP DOMAIN PROTEIN
Bpl_scaf_34142-4.47
Bpl_scaf_34142-4.49RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Bpl_scaf_34143-0.11
Bpl_scaf_34143-0.5GALACTOSIDE 2-L-FUCOSYLTRANSFERASE
Bpl_scaf_34153-0.5GABA-B RECEPTOR
Bpl_scaf_34169-0.8
Bpl_scaf_3417-0.3
Bpl_scaf_34176-0.0
Bpl_scaf_34176-0.16ANKYRIN REPEAT FAMILY A
Bpl_scaf_34176-0.19
Bpl_scaf_34182-0.4UNCHARACTERIZED
Bpl_scaf_34191-0.11PARANEOPLASTIC ANTIGEN
Bpl_scaf_34191-0.13
Bpl_scaf_34191-0.14
Bpl_scaf_34191-0.3
Bpl_scaf_34191-0.6
Bpl_scaf_34208-0.0
Bpl_scaf_34212-0.10SRCR DOMAIN-CONTAINING PROTEIN
Bpl_scaf_34212-0.3
Bpl_scaf_34220-0.0
Bpl_scaf_34230-0.0
Bpl_scaf_34230-0.16
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