Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_34365-0.12 | |
| Bpl_scaf_34365-0.14 | |
| Bpl_scaf_34365-0.16 | |
| Bpl_scaf_34365-0.17 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_34375-0.20 | DESMOGLEIN FAMILY MEMBER |
| Bpl_scaf_34384-0.13 | BETA-AMYLOID BINDING PROTEIN-RELATED |
| Bpl_scaf_34384-0.14 | |
| Bpl_scaf_34384-0.16 | D-ALANYL-D-ALANINE-CARBOXYPEPTIDASE/ENDOPEPTIDASE AMPH |
| Bpl_scaf_34384-0.28 | PENICILLIN-BINDING PROTEIN |
| Bpl_scaf_34384-0.7 | NANOS PROTEIN |
| Bpl_scaf_34403-0.5 | RIBOPHORIN II |
| Bpl_scaf_34403-0.6 | |
| Bpl_scaf_34413-0.13 | |
| Bpl_scaf_34413-0.15 | |
| Bpl_scaf_34413-0.8 | |
| Bpl_scaf_34414-0.3 | TETRA THYMOSIN |
| Bpl_scaf_34414-0.6 | |
| Bpl_scaf_34414-1.11 | AMIDOPHOSPHORIBOSYLTRANSFERASE |
| Bpl_scaf_34414-1.13 | MULTIFUNCTIONAL PROTEIN ADE2 |
| Bpl_scaf_34414-1.27 | SERINE/THREONINE-PROTEIN KINASE |
| Bpl_scaf_34414-1.30 | XAA-PRO AMINOPEPTIDASE 3 |
| Bpl_scaf_34414-2.1 | |
| Bpl_scaf_34414-2.2 | HSC70-INTERACTING PROTEIN |
| Bpl_scaf_34414-3.15 | TRANSLATION INITIATION FACTOR IF-3 |
| Bpl_scaf_34414-3.4 | EXOSOME COMPLEX COMPONENT |
| Bpl_scaf_34414-3.9 | PHOSPHATASE WITH HOMOLOGY TO TENSIN |
| Bpl_scaf_34414-4.5 | FIP1-LIKE 1 PROTEIN |
| Bpl_scaf_34414-5.7 | MITOGEN-ACTIVATED PROTEIN KINASE |
| Bpl_scaf_34414-6.10 | BONUS, ISOFORM C-RELATED |
| Bpl_scaf_34414-6.13 | RED PROTEIN IK FACTOR CYTOKINE IK |
| Bpl_scaf_34414-6.14 | PROTEIN ABHD18 |
| Bpl_scaf_34414-6.24 | BIFUNCTIONAL DTTP/UTP PYROPHOSPHATASE/METHYLTRANSFERASE PROTEIN-RELATED |
| Bpl_scaf_34414-6.25 | LUPUS LA PROTEIN-RELATED |
| Bpl_scaf_34427-0.0 | THIOESTERASE |
| Bpl_scaf_34427-1.0 | GUANYLYL CYCLASE |
| Bpl_scaf_34427-1.1 | GUANYLYL CYCLASE |
| Bpl_scaf_34427-10.12 | FUKUTIN RELATED PROTEIN |
| Bpl_scaf_34427-10.14 | HILLARIN |
| Bpl_scaf_34427-10.15 | - |
| Bpl_scaf_34427-10.16 | DYNEIN INTERMEDIATE CHAIN |
| Bpl_scaf_34427-10.31 | |
| Bpl_scaf_34427-11.1 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
| Bpl_scaf_34427-11.2 | ZINC FINGER PROTEIN 200 |
| Bpl_scaf_34427-12.11 | TRANSMEMBRANE PROTEIN 15-RELATED |
| Bpl_scaf_34427-12.6 | GLUTAREDOXIN 2 |
| Bpl_scaf_34427-12.7 | GLUTAREDOXIN 2 |
| Bpl_scaf_34427-12.8 | G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_34427-15.15 | OS12G0117600 PROTEIN |
| Bpl_scaf_34427-15.3 | 39S RIBOSOMAL PROTEIN L35, MITOCHONDRIAL |
| Bpl_scaf_34427-15.31 | PROTEIN KINASE DOMAIN-CONTAINING PROTEIN |
