Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_34427-15.32 | BTB/POZ DOMAIN-CONTAINING ADAPTER FOR CUL3-MEDIATED RHOA DEGRADATION PROTEIN FAMILY MEMBER |
| Bpl_scaf_34427-15.33 | PROTEIN PBDC1 |
| Bpl_scaf_34427-15.34 | MITOFILIN |
| Bpl_scaf_34427-15.7 | PROTEIN KINASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_34427-2.31 | |
| Bpl_scaf_34427-2.8 | GUANYLYL CYCLASE DOMAIN CONTAINING PROTEIN 1 GUCD1 |
| Bpl_scaf_34427-2.9 | ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE |
| Bpl_scaf_34427-3.14 | RUN DOMAIN-CONTAINING 3 PROTEIN RUNDC3 |
| Bpl_scaf_34427-3.15 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_34427-3.17 | |
| Bpl_scaf_34427-3.20 | |
| Bpl_scaf_34427-4.3 | SPECKLE-TYPE POZ PROTEIN |
| Bpl_scaf_34427-5.12 | BETA-AMYLOID BINDING PROTEIN-RELATED |
| Bpl_scaf_34427-5.13 | SYNTAXIN-18 |
| Bpl_scaf_34427-5.24 | INTERLEUKIN-1 RECEPTOR-ASSOCIATED KINASE |
| Bpl_scaf_34427-5.25 | |
| Bpl_scaf_34427-5.6 | ZINC FINGER PROTEIN |
| Bpl_scaf_34427-6.1 | DEFECTIVE PROBOSCIS EXTENSION RESPONSE DPR -RELATED |
| Bpl_scaf_34427-7.23 | TETRASPANIN |
| Bpl_scaf_34427-7.24 | ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL |
| Bpl_scaf_34427-7.8 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_34427-7.9 | MULTI-COPPER OXIDASE |
| Bpl_scaf_34427-8.36 | COLLAGEN ALPHA |
| Bpl_scaf_34427-8.37 | COLLAGEN ALPHA |
| Bpl_scaf_34427-8.9 | COLLAGEN ALPHA |
| Bpl_scaf_34427-9.21 | COLLAGEN ALPHA |
| Bpl_scaf_34427-9.6 | ALDEHYDE DEHYDROGENASE-RELATED |
| Bpl_scaf_34427-9.7 | COLLAGEN ALPHA |
| Bpl_scaf_34432-0.8 | |
| Bpl_scaf_34432-0.9 | |
| Bpl_scaf_34444-0.10 | TUMOR NECROSIS FACTOR INDUCED PROTEIN |
| Bpl_scaf_34444-0.11 | PROTEASE FAMILY C15 PYROGLUTAMYL-PEPTIDASE I-RELATED |
| Bpl_scaf_34444-0.15 | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE |
| Bpl_scaf_34444-0.16 | |
| Bpl_scaf_34444-0.3 | |
| Bpl_scaf_34444-0.30 | 40S RIBOSOMAL PROTEIN S6 |
| Bpl_scaf_34452-0.0 | |
| Bpl_scaf_34452-0.17 | |
| Bpl_scaf_34452-0.18 | |
| Bpl_scaf_34452-0.20 | |
| Bpl_scaf_34452-0.24 | |
| Bpl_scaf_34452-0.33 | |
| Bpl_scaf_34452-0.9 | |
| Bpl_scaf_34457-0.8 | |
| Bpl_scaf_34457-0.9 | |
| Bpl_scaf_34466-0.21 | TYROSINE-PROTEIN KINASE |
| Bpl_scaf_34466-0.24 | |
| Bpl_scaf_34466-0.25 | |
| Bpl_scaf_34471-0.5 | PROPERDIN |
| Bpl_scaf_34471-1.10 | C-TYPE LECTIN SUPERFAMILY MEMBER |
