Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_3470-6.12 | G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_3470-6.13 | AGAP005574-PA |
| Bpl_scaf_3470-7.11 | SOLUTE CARRIER FAMILY 35, MEMBER F5 |
| Bpl_scaf_3470-7.12 | TUBULIN POLYGLUTAMYLASE COMPLEX SUBUNIT 1 |
| Bpl_scaf_3470-7.17 | ATP-DEPENDENT DNA HELICASE |
| Bpl_scaf_3471-0.4 | METHYLTHIOADENOSINE/PURINE NUCLEOSIDE PHOSPHORYLASE |
| Bpl_scaf_3471-0.5 | COX ASSEMBLY MITOCHONDRIAL PROTEIN |
| Bpl_scaf_3471-1.0 | |
| Bpl_scaf_3471-1.2 | |
| Bpl_scaf_3471-1.6 | |
| Bpl_scaf_3471-2.4 | TYROSINE-PROTEIN KINASE |
| Bpl_scaf_3471-2.8 | BLR6086 PROTEIN |
| Bpl_scaf_3471-3.10 | DIMETHYLANILINE MONOOXYGENASE |
| Bpl_scaf_3471-3.11 | 60S RIBOSOMAL PROTEIN L13 |
| Bpl_scaf_3471-3.12 | PROTEASOME ASSEMBLY CHAPERONE 2 |
| Bpl_scaf_3471-4.5 | |
| Bpl_scaf_3471-4.6 | TARGETING PROTEIN FOR XKLP2 |
| Bpl_scaf_3471-5.6 | BONUS, ISOFORM C-RELATED |
| Bpl_scaf_3471-5.7 | ANAMORSIN |
| Bpl_scaf_3471-6.12 | DNA REPAIR/RNA PROCESSING CPSF FAMILY |
| Bpl_scaf_3471-6.13 | TONSOKU-LIKE PROTEIN |
| Bpl_scaf_3471-7.17 | GH28348P |
| Bpl_scaf_3471-7.41 | APOLIPOPROTEIN D |
| Bpl_scaf_3471-7.42 | GH28348P |
| Bpl_scaf_3471-7.43 | CEREBELLIN-RELATED |
| Bpl_scaf_3471-7.44 | ZINC FINGER PROTEIN ZIC AND GLI |
| Bpl_scaf_3471-7.7 | GH28348P |
| Bpl_scaf_34735-0.2 | TENEURIN AND N-ACETYLGLUCOSAMINE-1-PHOSPHODIESTER ALPHA-N-ACETYLGLUCOSAMINIDASE |
| Bpl_scaf_34736-0.1 | |
| Bpl_scaf_34736-0.6 | TRANSCRIPTIONAL ACTIVATOR CUBITUS INTERRUPTUS |
| Bpl_scaf_34737-0.3 | |
| Bpl_scaf_34737-1.6 | RING-TYPE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_34737-1.7 | NUCLEAR PORE COMPLEX PROTEIN SEC13 / SEH1 FAMILY MEMBER |
| Bpl_scaf_34737-1.8 | SACCHAROPINE DEHYDROGENASE |
| Bpl_scaf_34737-10.1 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_34737-2.11 | |
| Bpl_scaf_34737-2.14 | DALRD3 PROTEIN |
| Bpl_scaf_34737-2.20 | |
| Bpl_scaf_34737-2.22 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| Bpl_scaf_34737-2.9 | |
| Bpl_scaf_34737-3.4 | ZINC FINGER PROTEIN 277 |
| Bpl_scaf_34737-3.5 | |
| Bpl_scaf_34737-4.17 | |
| Bpl_scaf_34737-4.4 | DEDICATOR OF CYTOKINESIS |
| Bpl_scaf_34737-4.5 | |
| Bpl_scaf_34737-5.7 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
| Bpl_scaf_34737-5.8 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
| Bpl_scaf_34737-6.10 | |
| Bpl_scaf_34737-6.11 | |
| Bpl_scaf_34737-7.5 |
