Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_34737-8.12 | RIBOSOME BIOGENESIS PROTEIN |
| Bpl_scaf_34737-8.14 | |
| Bpl_scaf_34737-8.16 | GH11602P |
| Bpl_scaf_34737-8.30 | |
| Bpl_scaf_34737-9.4 | LIN37 HOMOLOG |
| Bpl_scaf_34737-9.5 | HISTONE DEACETYLASE HDAC1-RELATED |
| Bpl_scaf_34742-1.10 | TRANSCRIPTION FACTOR ONECUT |
| Bpl_scaf_34742-2.10 | GLIOMA TUMOR SUPPRESSOR CANDIDATE REGION GENE 1 |
| Bpl_scaf_34742-2.14 | SERINE PROTEASE-RELATED |
| Bpl_scaf_34742-2.16 | NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED |
| Bpl_scaf_34742-2.5 | |
| Bpl_scaf_34742-3.2 | |
| Bpl_scaf_34742-3.6 | MPS ONE BINDER KINASE ACTIVATOR-LIKE MOB |
| Bpl_scaf_34743-0.7 | CEREBELLIN-RELATED |
| Bpl_scaf_34746-0.0 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| Bpl_scaf_34746-0.2 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| Bpl_scaf_34749-0.0 | |
| Bpl_scaf_34751-0.0 | |
| Bpl_scaf_34753-0.0 | |
| Bpl_scaf_34753-1.25 | SYS1 |
| Bpl_scaf_34753-1.8 | VACUOLAR SORTING PROTEIN 35 |
| Bpl_scaf_34753-1.9 | CYTOCHROME C OXIDASE SUBUNIT IV |
| Bpl_scaf_34753-2.4 | RIKEN CDNA 6820408C15 |
| Bpl_scaf_34753-3.4 | CYTOCHROME P450 FAMILY 3 |
| Bpl_scaf_34757-0.0 | 5-HYDROXYTRYPTAMINE RECEPTOR |
| Bpl_scaf_34758-0.2 | |
| Bpl_scaf_34759-0.0 | |
| Bpl_scaf_34759-0.5 | |
| Bpl_scaf_3476-0.17 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
| Bpl_scaf_3476-0.21 | |
| Bpl_scaf_3476-0.6 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
| Bpl_scaf_3476-1.13 | MRNA EXPORT FACTOR AND BUB3 |
| Bpl_scaf_3476-1.14 | |
| Bpl_scaf_3476-1.17 | SOX TRANSCRIPTION FACTOR |
| Bpl_scaf_3476-1.19 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_3476-1.30 | BONUS, ISOFORM C-RELATED |
| Bpl_scaf_3476-1.33 | ARSENITE METHYLTRANSFERASE |
| Bpl_scaf_3476-1.34 | |
| Bpl_scaf_3476-1.8 | |
| Bpl_scaf_34762-0.1 | |
| Bpl_scaf_34762-0.9 | ZINC FINGER PROTEIN |
| Bpl_scaf_34764-0.0 | FATTY ACID ACYL TRANSFERASE-RELATED |
| Bpl_scaf_34764-0.15 | UNCHARACTERIZED |
| Bpl_scaf_34764-0.2 | FATTY ACID ACYL TRANSFERASE-RELATED |
| Bpl_scaf_34764-1.20 | GENERAL VESICULAR TRANSPORT FACTOR P115 |
| Bpl_scaf_34764-1.7 | DOUBLE-STRAND BREAK REPAIR PROTEIN MRE11 |
| Bpl_scaf_34764-1.8 | UPF0602 PROTEIN C4ORF47 |
| Bpl_scaf_34764-2.2 | UPF0472 PROTEIN C16ORF72 |
| Bpl_scaf_34764-2.3 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| Bpl_scaf_34764-3.12 | HEPARAN SULFATE SULFOTRANSFERASE |
