About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides53744ENDOGLIN/TGF-BETA RECEPTOR TYPE III
Paelopatides53745ENDOGLIN/TGF-BETA RECEPTOR TYPE III
Paelopatides53746-
Paelopatides53748DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM A
Paelopatides53749ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4
Paelopatides53750FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides53751MYOTONIC DYSTROPHY S/T KINASE-RELATED
Paelopatides53752-
Paelopatides53753-
Paelopatides53754-
Paelopatides53755-
Paelopatides53756NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides53757POLYCOMB PROTEIN
Paelopatides53758NADH-UBIQUINONE OXIDOREDUCTASE B15 SUBUNIT
Paelopatides53759MAP/MICROTUBULE AFFINITY-REGULATING KINASE
Paelopatides53760-
Paelopatides53761-
Paelopatides53762LEUCINE RICH REPEAT FAMILY PROTEIN
Paelopatides53763-
Paelopatides53764NOTCH LIGAND FAMILY MEMBER
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