About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides53789ALPHA- 1,3 -FUCOSYLTRANSFERASE
Paelopatides53790ALPHA- 1,3 -FUCOSYLTRANSFERASE
Paelopatides53791PROTEIN CBG26694
Paelopatides53792PROTEIN CBG26694
Paelopatides53793LD33804P
Paelopatides53794AGAP004733-PA
Paelopatides53795-
Paelopatides53796TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN
Paelopatides53797-
Paelopatides53798B2 BRADYKININ RECEPTOR/ANGIOTENSIN II RECEPTOR
Paelopatides53799-
Paelopatides53800SYNAPTIC ADHESION-LIKE MOLECULE SALM
Paelopatides53801-
Paelopatides53802ALPHA-TOCOPHEROL TRANSFER PROTEIN-RELATED
Paelopatides53803AGAP008170-PA
Paelopatides53804HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides53805TYROSINE-PROTEIN KINASE
Paelopatides53806HISTONE DEACETYLASE HDAC1-RELATED
Paelopatides53807-
Paelopatides53808GLYCINE AMIDINOTRANSFERASE, MITOCHONDRIAL
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