About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides53704ZGC:101858
Paelopatides53705SRCR DOMAIN-CONTAINING PROTEIN
Paelopatides53706-
Paelopatides53707SJOEGREN SYNDROME/SCLERODERMA AUTOANTIGEN 1
Paelopatides53708TANDEM PH DOMAIN CONTAINING PROTEIN
Paelopatides53709-
Paelopatides53710HYPOTHETICAL PROTEIN LOC691189
Paelopatides53711ARMADILLO-TYPE FOLD-RELATED
Paelopatides53712RETROTRANSPOSON
Paelopatides53713-
Paelopatides53714PROTEIN CBG26694
Paelopatides53715FERRITIN
Paelopatides53716-
Paelopatides53717MALATE AND LACTATE DEHYDROGENASE
Paelopatides53718PHD FINGER PROTEIN 12
Paelopatides53719TRANSMEMBRANE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 6 TMCO6
Paelopatides53720RING FINGER 10 FAMILY MEMBER
Paelopatides53721CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides53722-
Paelopatides53723-
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