About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides53643E3 UBIQUITIN-PROTEIN LIGASE RAD18
Paelopatides53644PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides53645-
Paelopatides53646ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides53647PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides53648HEPARAN SULFATE 2-O-SULFOTRANSFERASE
Paelopatides53649INTER-ALPHA-TRYPSIN INHIBITOR HEAVY CHAIN FAMILY MEMBER
Paelopatides53650ENDONUCLEASE-RELATED
Paelopatides53651POL PROTEIN
Paelopatides53652INTER-ALPHA-TRYPSIN INHIBITOR HEAVY CHAIN FAMILY MEMBER
Paelopatides53653ADHESION G PROTEIN-COUPLED RECEPTOR G7
Paelopatides53654FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides53655-
Paelopatides53656POL PROTEIN
Paelopatides53657-
Paelopatides53658ENDONUCLEASE-RELATED
Paelopatides53659-
Paelopatides53660PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides53661ENZYMATIC POLYPROTEIN-RELATED
Paelopatides53662POL PROTEIN
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