About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides53684-
Paelopatides53685CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides53686-
Paelopatides53687FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides53688CYTOCHROME P450 508A4-RELATED
Paelopatides53689-
Paelopatides53690SODIUM-DEPENDENT GLUCOSE TRANSPORTER 1
Paelopatides53691RIKEN CDNA D130052B06 GENE
Paelopatides53692ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides53693-
Paelopatides53694ETS
Paelopatides53695REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides53696TITIN
Paelopatides53697NETRIN RECEPTOR UNC5
Paelopatides53698-
Paelopatides53699LP04239P
Paelopatides53700-
Paelopatides53701-
Paelopatides53702REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides53703PROTEIN CBG26694
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