About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides53562HIGH MOBILITY GROUP PROTEIN DSP1
Paelopatides53563-
Paelopatides53564REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides53565CERAMIDE GLUCOSYLTRANSFERASE
Paelopatides53566-
Paelopatides53567-
Paelopatides53568-
Paelopatides53569-
Paelopatides53570REVERSE TRANSCRIPTASES
Paelopatides53571TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides53572SNF2/RAD54 FAMILY MEMBER
Paelopatides53573-
Paelopatides53574ENDONUCLEASE-RELATED
Paelopatides53575ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides53576PROTEIN CBG26694
Paelopatides53577ION_TRANS DOMAIN-CONTAINING PROTEIN
Paelopatides53578FACIOGENITAL DYSPLASIA PROTEIN
Paelopatides53579POLYAMINE-MODULATED FACTOR 1
Paelopatides53580REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides53581-
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