About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides53442ENDONUCLEASE-RELATED
Paelopatides53443PROPIONYL-COA CARBOXYLASE BETA CHAIN
Paelopatides53444MSL2-RELATED
Paelopatides53445-
Paelopatides53446PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides53447UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
Paelopatides53448UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
Paelopatides53449EPM2A-INTERACTING PROTEIN 1
Paelopatides53450INACTIVE RHOMBOID PROTEIN
Paelopatides53451PYM PROTEIN
Paelopatides53452BLOC-1 COMPLEX SUBUNIT 1
Paelopatides53453ACTIN
Paelopatides53454ACTIN
Paelopatides53455ACTIN
Paelopatides53456ACTIN
Paelopatides53457ACTIN
Paelopatides53458ACTIN
Paelopatides53459HEPARAN SULFATE 2-O-SULFOTRANSFERASE
Paelopatides53460-
Paelopatides53461-
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